Factsheet for VIT_14s0108g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0052g00440.t01
VIT_13s0064g00580.t01
VIT_17s0000g02420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	VIT_17s0000g02420.t01	AT1G73590.1	17237354
AT3G28860.1	VIT_13s0064g00580.t01	AT3G21640.1	14517332
AT3G28860.1	VIT_11s0052g00440.t01	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	94.48	94.56
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	94.0	94.0
PGSC0003DMT400003590	Potato	plasma membrane	93.12	93.19
Solyc02g087870.2.1	Tomato	plasma membrane	92.88	92.95
GSMUA_Achr8P24160_001	Banana	plasma membrane	81.2	90.06
Bra025359.1-P	Field mustard	plasma membrane	89.28	89.14
AT3G28860.1	Thale cress	plasma membrane	89.28	89.14
CDY65012	Canola	plasma membrane	89.28	89.07
Bra039042.1-P	Field mustard	plasma membrane	89.12	88.98
CDX86408	Canola	plasma membrane	88.0	88.92
CDY00109	Canola	plasma membrane	88.4	88.75
CDY20012	Canola	plasma membrane	88.96	88.75
Os04t0459000-01	Rice	plasma membrane	85.52	84.91
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	85.44	84.56
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	85.2	84.39
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	85.2	84.26
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	85.68	84.13
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	84.8	83.93
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	84.8	83.73
HORVU2Hr1G080200.1	Barley	plasma membrane	84.72	83.58
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	40.64	83.01
Zm00001d002119_P006	Maize	cytosol	83.6	82.54
Zm00001d026426_P005	Maize	cytosol	84.0	82.48
TraesCS2B01G550700.2	Wheat	plasma membrane	82.48	82.02
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	83.12	81.81
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	82.64	81.6
TraesCS2D01G523100.2	Wheat	cytosol	82.96	81.59
GSMUA_Achr4P09980_001	Banana	plasma membrane	74.48	81.38
VIT_18s0001g14660.t01	Wine grape	peroxisome, plasma membrane, vacuole	50.4	51.64
VIT_02s0012g01660.t01	Wine grape	plasma membrane	50.64	50.93
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.04	50.81
VIT_14s0066g02320.t01	Wine grape	peroxisome	43.76	47.28
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	20.32	46.61
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	43.36	44.24
VIT_10s0003g02540.t01	Wine grape	plasma membrane	43.52	44.19
VIT_01s0137g00350.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	44.08	44.01
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.52	43.87
VIT_10s0003g02570.t01	Wine grape	plasma membrane	43.28	43.66
VIT_05s0020g00890.t01	Wine grape	cytosol, peroxisome, plasma membrane	44.56	43.04
VIT_11s0016g03160.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	41.76	42.61
VIT_10s0003g02580.t01	Wine grape	plasma membrane	43.04	42.53
VIT_17s0000g09760.t01	Wine grape	plasma membrane	40.16	41.94
VIT_16s0098g00570.t01	Wine grape	cytosol, plasma membrane, vacuole	39.2	41.25
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	40.72	39.15
VIT_06s0004g04100.t01	Wine grape	cytosol	42.08	37.44
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	41.52	32.91

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100262734	wikigene:100262734	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB47534
ProteinID:CCB47534.1	UniProt:F6H5R3	EMBL:FN595239	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	EntrezGene:LOC100262734	wikigene:LOC100262734	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221
PANTHER:PTHR24221:SF382	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TIGR:TC64478	TMHMM:TMhelix
UniParc:UPI000210A985	ArrayExpress:VIT_14s0108g00430	EnsemblPlantsGene:VIT_14s0108g00430	EnsemblPlants:VIT_14s0108g00430.t01	unigene:Vvi.12916	RefSeq:XP_002283051
RefSeq:XP_002283051.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:29196654..29203683

Molecular Weight (calculated)

135821.0 Da

IEP (calculated)

8.033

GRAVY (calculated)

0.114

Length

1250 amino acids

Sequence
(BLAST)

0001: MAEGGAEAKA LPEAEKKKEQ SLPFYQLFSF ADKYDWILMV SGSVGAVIHG SSMPVFFLLF GEMVNGFGKN QTDLSKMTEE VAKYALYFVY LGVVVCISSY
0101: AEIACWMYTG ERQVSTLRKK YLEAVLKQDV GFFDTDARTG DIVFSVSTDT LLVQDAISEK VGNFIHYLST FLAGLVVGFV SAWRLALLSV AVIPGIAFAG
0201: GLYAYTLTGL TSKSRESYAN AGIIAEQAIA QVRTVYSYVG ESKALNSYSD AIQNTLKLGY KAGMAKGLGL GCTYGIACMS WALVFWYAGV FIRNGQTDGG
0301: KAFTAIFSAI VGGMSLGQSF SNLGAFSKGK AAGYKLMEII RQKPSIVQDP SDGKCLAEVN GNIEFKDVTF SYPSRPDVII FRDFSIFFPA GKTVAVVGGS
0401: GSGKSTVVSL IERFYDPNQG QVLLDNVDIK TLQLRWLRDQ IGLVNQEPAL FATTILENIL YGKPDATAAE VEAAASAANA HSFITLLPNG YNTQVGERGT
0501: QLSGGQKQRI AIARAMLKNP KILLLDEATS ALDAGSESIV QEALDRLMVG RTTVVVAHRL STIRNVDTIA VIQQGQVVET GTHEELSAKA GAYASLIRFQ
0601: EMVRNRDFAN PSTRRSRSSR LSHSLSTKSL SLRSGSLRNL SYQYSTGADG RIEMVSNAET DKKNPAPDGY FYRLLNLNAP EWPYSIMGAV GSVLSGFIGP
0701: TFAIVMSNMI EVFYYRNPAS MERKTKEYVF IYIGAGLYAV IAYLIQHYFF SIMGENLTTR VRRMMLAAIL RNEVGWFDEE ENNSSLLAAR LATDAADVKS
0801: AIAERISVIL QNMTSLLTSF IVAFIVEWRV SLLILATFPL LVLANFAQQL SLKGFAGDTA KAHAKTSMIA GEGVSNIRTV AAFNAQEKIL SLFCYELRVP
0901: QMQSLRRSQT SGLLFGLSQL ALYASEALIL WYGSHLVSKG ASTFSKVIKV FVVLVITANS VAETVSLAPE IIRGGEAVGS VFSILDRSTK IDPDDSDAEP
1001: VESIRGEIEL RHVDFSYPSR SDITVFKDLN LRIRAGQSQA LVGASGSGKS SVIALIERFY DPTAGKVMID GKDVRRLNLK SLRLKIGLVQ QEPALFAASI
1101: LDNIAYGKDG ATEAEVIEAA RAANVHGFVS GLPDGYKTPV GERGVQLSGG QKQRIAIARA VLKDPTILLL DEATSALDAE SECVLQEALE RLMRGRTTVL
1201: VAHRLSTIRG VDSIGVVQDG RIVEQGSHSE LISRPEGAYS RLLQLQHHHI

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.