Factsheet for AT3G28860.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025359.1-P	Field mustard	plasma membrane	96.96	96.96
CDX86408	Canola	plasma membrane	95.69	96.85
CDY65012	Canola	plasma membrane	96.73	96.65
Bra039042.1-P	Field mustard	plasma membrane	96.17	96.17
CDY20012	Canola	plasma membrane	96.09	96.01
CDY00109	Canola	plasma membrane	95.29	95.82
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	90.66	90.87
PGSC0003DMT400003590	Potato	plasma membrane	90.26	90.47
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	90.26	90.4
Solyc02g087870.2.1	Tomato	plasma membrane	90.02	90.23
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	89.14	89.28
GSMUA_Achr8P24160_001	Banana	plasma membrane	77.88	86.51
Os04t0459000-01	Rice	plasma membrane	83.31	82.84
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	82.59	81.87
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	82.51	81.72
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	82.35	81.7
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	82.19	81.47
HORVU2Hr1G080200.1	Barley	plasma membrane	82.27	81.29
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	82.43	81.07
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	80.75	79.86
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	38.66	79.08
TraesCS2B01G550700.2	Wheat	plasma membrane	79.23	78.92
Zm00001d002119_P006	Maize	cytosol	79.71	78.83
Zm00001d026426_P005	Maize	cytosol	80.11	78.79
TraesCS2D01G523100.2	Wheat	cytosol	79.55	78.36
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	79.23	78.36
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	79.47	78.35
GSMUA_Achr4P09980_001	Banana	plasma membrane	71.09	77.8
AT2G36910.1	Thale cress	peroxisome	53.35	51.94
AT1G10680.1	Thale cress	plasma membrane	49.28	50.29
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	49.68	49.96
AT4G25960.1	Thale cress	plasma membrane	50.56	49.73
AT3G28345.1	Thale cress	plasma membrane	44.57	45.0
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	44.17	44.96
AT3G28390.1	Thale cress	plasma membrane	43.93	44.9
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	46.09	44.87
AT4G18050.2	Thale cress	plasma membrane	44.49	44.7
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	43.61	44.43
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	45.21	44.29
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	45.29	43.75
AT3G28360.1	Thale cress	plasma membrane	42.57	43.4
AT5G46540.1	Thale cress	golgi	42.01	42.15
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	41.69	37.07
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	41.13	36.6

Protein Annotations

Gene3D:1.20.1560.10	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:822519	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:AEE77498.1	EMBL:AF540384
EMBL:AK117168	ArrayExpress:AT3G28860	EnsemblPlantsGene:AT3G28860	RefSeq:AT3G28860	TAIR:AT3G28860	RefSeq:AT3G28860-TAIR-G
EnsemblPlants:AT3G28860.1	TAIR:AT3G28860.1	Symbol:ATMDR1	Unigene:At.24939	ProteinID:BAB02129.1	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008361	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009637	GO:GO:0009639	GO:GO:0009640	GO:GO:0009653	GO:GO:0009719
GO:GO:0009733	GO:GO:0009734	GO:GO:0009791	GO:GO:0009908	GO:GO:0009926	GO:GO:0009958
GO:GO:0009987	GO:GO:0010218	GO:GO:0010315	GO:GO:0010329	GO:GO:0010540	GO:GO:0010541
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0043481	GO:GO:0048364	GO:GO:0048443	GO:GO:0048527	GO:GO:0055085	GO:GO:0060918
GO:GO:0090691	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	RefSeq:NP_189528.1	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000256
PO:PO:0000258	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0005052	PO:PO:0006203	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020121	PO:PO:0020124	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221
PANTHER:PTHR24221:SF382	UniProt:Q9LJX0	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI00000A5E2E	SEG:seg	:	:	:	:

Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]

Coordinates

chr3:-:10870005..10877578

Molecular Weight (calculated)

136796.0 Da

IEP (calculated)

8.374

GRAVY (calculated)

0.128

Length

1252 amino acids

Sequence
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.