Factsheet for AT4G01820.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	nucleus, peroxisome, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	86.74	86.67
CDY24379	Canola	plasma membrane	78.03	82.04
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	82.1	81.97
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	77.79	81.57
Bra003445.1-P	Field mustard	peroxisome	81.86	80.22
CDY58790	Canola	peroxisome	80.07	79.94
CDY51560	Canola	peroxisome	79.9	78.5
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	81.37	78.25
Os05t0137200-01	Rice	plasma membrane	22.46	70.23
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	62.9	69.89
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	73.23	69.39
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	71.85	68.88
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	71.77	68.8
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	71.68	68.51
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	71.03	68.04
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	70.95	67.75
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	71.11	67.44
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	69.41	66.18
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	64.61	65.51
GSMUA_Achr1P25070_001	Banana	plasma membrane	47.93	65.01
OQU77362	Sorghum	mitochondrion, plasma membrane	59.56	63.43
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	65.5	62.99
KXG32330	Sorghum	plastid	65.5	62.89
Solyc06g009290.2.1	Tomato	nucleus	70.71	62.07
AT4G18050.2	Thale cress	plasma membrane	61.76	60.91
TraesCS1A01G081300.1	Wheat	unclear	62.73	60.42
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	62.57	60.31
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	62.57	60.27
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	65.09	59.93
HORVU1Hr1G017460.3	Barley	plasma membrane	62.41	59.78
AT5G46540.1	Thale cress	golgi	59.07	58.17
GSMUA_Achr9P16700_001	Banana	plasma membrane	59.89	57.95
AT1G10680.1	Thale cress	plasma membrane	43.61	43.68
AT3G28860.1	Thale cress	plasma membrane	44.43	43.61
AT4G25960.1	Thale cress	plasma membrane	45.0	43.44
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	41.5	40.96
AT2G36910.1	Thale cress	peroxisome	42.55	40.67
AT3G28345.1	Thale cress	plasma membrane	40.68	40.32
AT3G28390.1	Thale cress	plasma membrane	39.54	39.67
AT3G28360.1	Thale cress	plasma membrane	38.89	38.93
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	37.75	32.95
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	36.94	32.27

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:826951	InterPro:AAA+_ATPase	ProteinID:AAD22644.1	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:AEE82081.1	ArrayExpress:AT4G01820	EnsemblPlantsGene:AT4G01820
RefSeq:AT4G01820	TAIR:AT4G01820	RefSeq:AT4G01820-TAIR-G	EnsemblPlants:AT4G01820.1	TAIR:AT4G01820.1	Unigene:At.54090
ProteinID:CAA75922.1	ProteinID:CAB80675.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009987	GO:GO:0010315	GO:GO:0010329	GO:GO:0010540
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	RefSeq:NP_192091.1	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	Symbol:PGP3	PO:PO:0000293	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	UniProt:Q9SYI2	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI00000A7327	SEG:seg	:	:	:

Description

ABCB3ABC transporter B family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYI2]

Coordinates

chr4:-:780646..785340

Molecular Weight (calculated)

133242.0 Da

IEP (calculated)

8.181

GRAVY (calculated)

0.227

Length

1229 amino acids

Sequence
(BLAST)

0001: MEEKTKTVPF YKLFSFSDST DVLLMIVGSI GAIGNGVGFP LMTLLFGDLI DSIGQNQSNK DIVEIVSKVC LKFVYLGLGT LGAAFLQVAC WMITGERQAA
0101: RIRSLYLKTI LRQDIGFFDV ETSTGEVVGR MSGDTVLILE AMGEKVGKFI QLIATFVGGF VLAFVKGWLL TLVMLVSIPL LAIAGAAMPI IVTRASSREQ
0201: AAYAKASTVV EQTLGSIRTV ASFTGEKQAM KSYREFINLA YRASVKQGFS MGLGLGVVFF VFFCSYALAI WFGGEMILKK GYTGGEVVNV MVTVVASSMS
0301: LGQTTPCLTA FAAGKAAAYK MFETIERKPS IDAFDLNGKV LEDIRGEIEL RDVCFSYPAR PMEEVFGGFS LLIPSGATAA LVGESGSGKS SVISLIERFY
0401: DPSSGSVLID GVNLKEFQLK WIRGKIGLVS QEPVLFSSSI MENIGYGKEN ATVEEIQAAA KLANAANFID KLPRGLETLV GEHGTQLSGG QKQRIAIARA
0501: ILKDPRILLL DEATSALDAE SERVVQEALD RVMMSRTTVI VAHRLSTVRN ADMIAVIHRG KIVEEGSHSE LLKDHEGAYA QLIRLQKIKK EPKRLESSNE
0601: LRDRSINRGS SRNIRTRVHD DDSVSVLGLL GRQENTEISR EQSRNVSITR IAALNKPETT ILILGTLLGA VNGTIFPIFG ILFAKVIEAF FKPPHDMKRD
0701: SRFWSMIFVL LGVASLIVYP MHTYLFAVAG GRLIQRIRVM CFEKVVHMEV GWFDDPENSS GTIGSRLSAD AALIKTLVGD SLSLSVKNAA AAVSGLIIAF
0801: TASWKLAVII LVMIPLIGIN GYLQIKFIKG FTADAKAKYE EASQVANDAV GSIRTVASFC AEEKVMEMYK KRCEDTIKSG IKQGLISGVG FGISFFVLYS
0901: VYASCFYVGA RLVKAGRTNF NDVFQVFLAL TMTAIGISQA SSFAPDSSKA KGAAASIFGI IDGKSMIDSR DESGLVLENV KGDIELCHIS FTYQTRPDVQ
1001: IFRDLCFAIR AGQTVALVGE SGSGKSTVIS LLQRFYDPDS GHITLDRVEL KKLQLKWVRQ QMGLVGQEPV LFNDTIRSNI AYGKGGDEAS EAEIIAAAEL
1101: ANAHGFISSI QQGYDTVVGE RGIQLSGGQK QRVAIARAIV KEPKILLLDE ATSALDAESE RVVQDALDRV MVNRTTVVVA HRLSTIKNAD VIAVVKNGVI
1201: VEKGTHETLI NIEGGVYASL VQLHISASS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.