Factsheet for AT3G28345.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86445	Canola	plasma membrane	91.94	91.64
Bra025326.1-P	Field mustard	plasma membrane	91.69	91.4
CDX85192	Canola	plasma membrane	91.77	89.68
CDY04018	Canola	plasma membrane	89.03	88.96
AT3G28390.1	Thale cress	plasma membrane	75.89	76.82
VIT_14s0066g02320.t01	Wine grape	peroxisome	71.53	76.66
AT3G28360.1	Thale cress	plasma membrane	74.27	75.0
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	69.35	69.19
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	68.63	68.85
Os02t0190300-01	Rice	plasma membrane	68.95	68.67
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	67.34	68.16
TraesCS4A01G370600.1	Wheat	plasma membrane	66.53	66.96
TraesCS7D01G068400.1	Wheat	plasma membrane	66.21	66.64
Os02t0190000-00	Rice	plasma membrane	66.77	66.61
Os02t0189800-00	Rice	mitochondrion	39.84	66.04
EES05229	Sorghum	plasma membrane	62.02	61.82
Zm00001d016794_P001	Maize	plasma membrane	61.61	60.83
AT3G28860.1	Thale cress	plasma membrane	45.0	44.57
AT4G18050.2	Thale cress	plasma membrane	42.82	42.62
AT2G36910.1	Thale cress	peroxisome	44.11	42.53
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	42.58	42.41
AT1G10680.1	Thale cress	plasma membrane	41.29	41.73
AT4G25960.1	Thale cress	plasma membrane	42.42	41.32
AT5G46540.1	Thale cress	golgi	41.21	40.95
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	40.56	40.89
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	41.94	40.69
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	40.32	40.68
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	41.85	40.36
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	42.18	40.35
GSMUA_Achr1P18340_001	Banana	plasma membrane	62.02	36.76
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	37.74	33.26
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	37.74	33.24

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:822463	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:AEE77436.1	ArrayExpress:AT3G28345	EnsemblPlantsGene:AT3G28345	RefSeq:AT3G28345
TAIR:AT3G28345	RefSeq:AT3G28345-TAIR-G	EnsemblPlants:AT3G28345.1	TAIR:AT3G28345.1	Unigene:At.43730	ProteinID:BAB02627.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	RefSeq:NP_189475.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0005020	PO:PO:0005417	PO:PO:0005421
PO:PO:0005679	PO:PO:0005708	PO:PO:0007611	PO:PO:0009046	PO:PO:0009053	PO:PO:0020030
PO:PO:0020100	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF381
UniProt:Q9LHD1	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000009DB53
SEG:seg	:	:	:	:	:

Description

ABCB15ABC transporter B family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHD1]

Coordinates

chr3:-:10593690..10599042

Molecular Weight (calculated)

135649.0 Da

IEP (calculated)

8.171

GRAVY (calculated)

0.065

Length

1240 amino acids

Sequence
(BLAST)

0001: MGKEEEKESG RNKMNCFGSV RSIFMHADGV DWLLMGLGLI GAVGDGFTTP LVLLITSKLM NNIGGSSFNT DTFMQSISKN SVALLYVACG SWVVCFLEGY
0101: CWTRTGERQT ARMREKYLRA VLRQDVGYFD LHVTSTSDVI TSVSSDSFVI QDVLSEKLPN FLMSASTFVG SYIVGFILLW RLAIVGLPFI VLLVIPGLMY
0201: GRALISISRK IREEYNEAGF VAEQAISSVR TVYAFSGERK TISKFSTALQ GSVKLGIKQG LAKGITIGSN GITFAMWGFM SWYGSRMVMY HGAQGGTVFA
0301: VAAAIAIGGV SLGGGLSNLK YFFEAASVGE RIMEVINRVP KIDSDNPDGH KLEKIRGEVE FKNVKFVYPS RLETSIFDDF CLRVPSGKTV ALVGGSGSGK
0401: STVISLLQRF YDPLAGEILI DGVSIDKLQV KWLRSQMGLV SQEPALFATT IKENILFGKE DASMDDVVEA AKASNAHNFI SQLPNGYETQ VGERGVQMSG
0501: GQKQRIAIAR AIIKSPTILL LDEATSALDS ESERVVQEAL ENASIGRTTI LIAHRLSTIR NADVISVVKN GHIVETGSHD ELMENIDGQY STLVHLQQIE
0601: KQDINVSVKI GPISDPSKDI RNSSRVSTLS RSSSANSVTG PSTIKNLSED NKPQLPSFKR LLAMNLPEWK QALYGCISAT LFGAIQPAYA YSLGSMVSVY
0701: FLTSHDEIKE KTRIYALSFV GLAVLSFLIN ISQHYNFAYM GEYLTKRIRE RMLSKVLTFE VGWFDRDENS SGAICSRLAK DANVVRSLVG DRMALVVQTV
0801: SAVTIAFTMG LVIAWRLALV MIAVQPVIIV CFYTRRVLLK SMSKKAIKAQ DESSKLAAEA VSNVRTITAF SSQERIMKML EKAQESPRRE SIRQSWFAGF
0901: GLAMSQSLTS CTWALDFWYG GRLIQDGYIT AKALFETFMI LVSTGRVIAD AGSMTTDLAK GSDAVGSVFA VLDRYTSIDP EDPDGYETER ITGQVEFLDV
1001: DFSYPTRPDV IIFKNFSIKI EEGKSTAIVG PSGSGKSTII GLIERFYDPL KGIVKIDGRD IRSYHLRSLR RHIALVSQEP TLFAGTIREN IIYGGVSDKI
1101: DEAEIIEAAK AANAHDFITS LTEGYDTYCG DRGVQLSGGQ KQRIAIARAV LKNPSVLLLD EATSALDSQS ERVVQDALER VMVGRTSVVI AHRLSTIQNC
1201: DAIAVLDKGK LVERGTHSSL LSKGPTGIYF SLVSLQTTSG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.