Factsheet for AT3G55320.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65312	Canola	cytosol	93.25	93.85
CDX76106	Canola	cytosol, golgi, peroxisome	93.25	93.79
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	93.11	93.64
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	90.7	90.76
HORVU3Hr1G117250.1	Barley	mitochondrion	6.89	87.39
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	79.4	86.0
KRG92957	Soybean	nucleus	84.94	85.49
KRH36206	Soybean	cytosol, golgi, plastid	84.66	85.2
KRH70512	Soybean	extracellular	84.66	85.02
Solyc04g010310.2.1	Tomato	plasma membrane	77.34	84.75
KRH01590	Soybean	mitochondrion	84.3	84.66
GSMUA_Achr3P17720_001	Banana	peroxisome	74.43	83.71
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	78.48	78.87
TraesCS3A01G536300.1	Wheat	cytosol, plasma membrane, vacuole	77.98	78.37
TraesCS3D01G541700.1	Wheat	cytosol, plasma membrane, vacuole	78.05	78.11
Os03t0280000-01	Rice	plasma membrane	77.91	77.75
TraesCS3B01G607600.1	Wheat	cytosol, plasma membrane, vacuole	77.84	77.73
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	77.56	77.72
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	77.06	77.56
EER92449	Sorghum	plasma membrane	77.56	77.28
Zm00001d047780_P002	Maize	plasma membrane	77.34	77.07
TraesCS4B01G203000.1	Wheat	cytosol, plasma membrane, plastid	76.78	76.72
TraesCS4A01G101600.3	Wheat	cytosol, plasma membrane, plastid	76.78	76.72
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	76.56	76.51
AT3G28860.1	Thale cress	plasma membrane	37.07	41.69
AT1G10680.1	Thale cress	plasma membrane	36.29	41.65
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	36.58	41.37
AT2G36910.1	Thale cress	peroxisome	37.43	40.98
AT4G25960.1	Thale cress	plasma membrane	36.15	39.98
AT4G18050.2	Thale cress	plasma membrane	34.02	38.44
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	34.94	38.26
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	33.17	37.97
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	34.38	37.87
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	32.95	37.75
AT3G28345.1	Thale cress	plasma membrane	33.24	37.74
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	34.66	37.65
AT3G28390.1	Thale cress	plasma membrane	32.39	37.22
AT3G28360.1	Thale cress	plasma membrane	32.24	36.97
AT5G46540.1	Thale cress	golgi	32.17	36.3

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:824698	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	ProteinID:AEE79368.1	EMBL:AK118406	ArrayExpress:AT3G55320	EnsemblPlantsGene:AT3G55320
RefSeq:AT3G55320	TAIR:AT3G55320	RefSeq:AT3G55320-TAIR-G	EnsemblPlants:AT3G55320.1	TAIR:AT3G55320.1	Unigene:At.35033
EMBL:BT003695	ProteinID:CAB75766.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
RefSeq:NP_191092.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	Symbol:PGP20	PO:PO:0000005
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24222	PANTHER:PTHR24222:SF21	UniProt:Q9M3B9
SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI00000A12CE	SEG:seg

Description

ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]

Coordinates

chr3:-:20506992..20513533

Molecular Weight (calculated)

155164.0 Da

IEP (calculated)

6.155

GRAVY (calculated)

0.092

Length

1408 amino acids

Sequence
(BLAST)

0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.