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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:endoplasmic reticulum, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G28360.1 Thale cress plasma membrane 81.71 81.51
Bra025328.1-P Field mustard endoplasmic reticulum, golgi 68.57 78.58
Bra025331.1-P Field mustard plasma membrane 72.9 78.4
AT3G28345.1 Thale cress plasma membrane 76.82 75.89
VIT_14s0066g02320.t01 Wine grape peroxisome 66.53 70.44
Os02t0190300-01 Rice plasma membrane 63.92 62.89
OQU84543 Sorghum endoplasmic reticulum, plasma membrane 63.43 62.86
VIT_19s0085g00060.t01 Wine grape endoplasmic reticulum, plasma membrane, plastid 62.86 62.86
Zm00001d053706_P002 Maize mitochondrion, plasma membrane 63.67 62.75
Os02t0190000-00 Rice plasma membrane 63.1 62.19
TraesCS4A01G370600.1 Wheat plasma membrane 61.14 60.8
TraesCS7D01G068400.1 Wheat plasma membrane 61.06 60.71
Os02t0189800-00 Rice mitochondrion 37.06 60.7
EES05229 Sorghum plasma membrane 58.12 57.23
Zm00001d016794_P001 Maize plasma membrane 58.29 56.85
AT3G28860.1 Thale cress plasma membrane 44.9 43.93
AT1G27940.1 Thale cress peroxisome, plasma membrane, vacuole 43.27 42.57
AT1G10680.1 Thale cress plasma membrane 41.96 41.89
AT4G18050.2 Thale cress plasma membrane 42.29 41.57
AT4G25960.1 Thale cress plasma membrane 43.18 41.56
AT2G36910.1 Thale cress peroxisome 43.02 40.98
AT5G46540.1 Thale cress golgi 40.9 40.14
AT4G01830.1 Thale cress golgi, plasma membrane, vacuole 40.08 39.92
AT4G01820.1 Thale cress peroxisome, plasma membrane, vacuole 39.67 39.54
AT1G02520.1 Thale cress cytosol, peroxisome, plasma membrane 40.82 39.12
AT2G47000.1 Thale cress cytosol, peroxisome, plasma membrane 40.65 38.72
AT3G62150.2 Thale cress cytosol, nucleus, plasma membrane 40.9 38.66
GSMUA_Achr1P18340_001 Banana plasma membrane 57.39 33.6
AT2G39480.1 Thale cress cytosol, mitochondrion, plasma membrane 37.47 32.62
AT3G55320.1 Thale cress cytosol, peroxisome, plasma membrane 37.22 32.39
Protein Annotations
MapMan:24.1.3.1.1Gene3D:3.40.50.300EntrezGene:822468InterPro:AAA+_ATPaseInterPro:ABC1_TM_domInterPro:ABC1_TM_sf
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSProteinID:AEE77440.1ArrayExpress:AT3G28390EnsemblPlantsGene:AT3G28390RefSeq:AT3G28390
TAIR:AT3G28390RefSeq:AT3G28390-TAIR-GEnsemblPlants:AT3G28390.1TAIR:AT3G28390.1Unigene:At.53538ProteinID:BAB02855.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0016887GO:GO:0042626GO:GO:0055085InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640
RefSeq:NP_189480.1InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664Symbol:PGP18ScanProsite:PS00211
PFscan:PS50893PFscan:PS50929PANTHER:PTHR24221PANTHER:PTHR24221:SF381UniProt:Q9LSJ5SMART:SM00382
SUPFAM:SSF52540SUPFAM:SSF90123TMHMM:TMhelixUniParc:UPI00000A8C3DSEG:seg:
Description
ABCB18ABC transporter B family member 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSJ5]
Coordinates
chr3:-:10629425..10633967
Molecular Weight (calculated)
134311.0 Da
IEP (calculated)
8.354
GRAVY (calculated)
0.114
Length
1225 amino acids
Sequence
(BLAST)
0001: MMKSFGSIRS IFMHADGVDW MLMALGLIGA VGDGFITPII FFICSKLLNN VGGSSFDDET FMQTVAKNAV ALVYVACASW VICFIEGYCW TRTGERQAAK
0101: MREKYLKAVL RQDVGYFDLH VTSTSDVITS VSSDSLVIQD FLSEKLPNFL MNTSAFVASY IVGFLLLWRL TIVGFPFIIL LLIPGLMYGR ALIRISMKIR
0201: EEYNEAGSIA EQVISSVRTV YAFGSEKKMI EKFSTALQGS VKLGLRQGLA KGIAIGSNGI TYAIWGFLTW YGSRMVMNHG SKGGTVSSVI VCVTFGGTSL
0301: GQSLSNLKYF SEAFVVGERI MKVINRVPGI DSDNLEGQIL EKTRGEVEFN HVKFTYPSRP ETPIFDDLCL RVPSGKTVAL VGGSGSGKST VISLLQRFYD
0401: PIAGEILIDG LPINKLQVKW LRSQMGLVSQ EPVLFATSIK ENILFGKEDA SMDEVVEAAK ASNAHSFISQ FPNSYQTQVG ERGVQLSGGQ KQRIAIARAI
0501: IKSPIILLLD EATSALDSES ERVVQEALDN ASIGRTTIVI AHRLSTIRNA DVICVVHNGR IIETGSHEEL LEKLDGQYTS LVRLQQVDNK ESDHISVEEG
0601: QASSLSKDLK YSPKEFIHST SSNIVRDFPN LSPKDGKSLV PSFKRLMSMN RPEWKHALYG CLGAALFGAV QPIYSYSSGS MVSVYFLASH DQIKEKTRIY
0701: VLLFVGLALF TFLSNISQHY GFAYMGEYLT KRIRERMLGK ILTFEVNWFD KDENSSGAIC SRLAKDANMV RSLVGDRMSL LVQTISAVSI TCAIGLVISW
0801: RFSIVMMSVQ PVIVVCFYTQ RVLLKSMSRN AIKGQDESSK LAAEAVSNIR TITAFSSQER IINLLKMVQE GPRKDSARQS WLAGIMLGTS QSLITCVSAL
0901: NFWYGGKLIA DGKMMSKEFL EIFLIFASTG RVIAEAGTMT KDLVKGSDAV ASVFAVLDRN TTIEPENPDG YVPKKVKGQI SFSNVDFAYP TRPDVIIFQN
1001: FSIDIEDGKS TAIVGPSGSG KSTIISLIER FYDPLKGIVK IDGRDIRSCH LRSLRQHIAL VSQEPTLFAG TIRENIMYGG ASNKIDESEI IEAAKAANAH
1101: DFITSLSNGY DTCCGDRGVQ LSGGQKQRIA IARAVLKNPS VLLLDEATSA LDSQSESVVQ DALERLMVGR TSVVIAHRLS TIQKCDTIAV LENGAVVECG
1201: NHSSLLAKGP KGAYFSLVSL QRTLF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.