Factsheet for Bra025328.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025331.1-P	Field mustard	plasma membrane	86.9	81.56
AT3G28390.1	Thale cress	plasma membrane	78.58	68.57
AT3G28360.1	Thale cress	plasma membrane	76.89	66.94
VIT_14s0066g02320.t01	Wine grape	peroxisome	70.63	65.25
Bra025326.1-P	Field mustard	plasma membrane	74.93	64.39
Bra032855.1-P	Field mustard	cytosol	7.02	63.56
Os02t0189800-00	Rice	mitochondrion	41.44	59.22
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	63.8	55.67
Os02t0190300-01	Rice	plasma membrane	63.8	54.78
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	63.05	54.22
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	62.68	54.21
Os02t0190000-00	Rice	plasma membrane	62.49	53.74
TraesCS4A01G370600.1	Wheat	plasma membrane	61.46	53.33
TraesCS7D01G068400.1	Wheat	plasma membrane	60.99	52.92
EES05229	Sorghum	plasma membrane	58.37	50.16
Zm00001d016794_P001	Maize	plasma membrane	58.75	50.0
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	48.55	41.82
Bra039042.1-P	Field mustard	plasma membrane	45.74	39.06
Bra025359.1-P	Field mustard	plasma membrane	45.46	38.82
Bra032856.1-P	Field mustard	plasma membrane	43.41	37.45
Bra013936.1-P	Field mustard	plasma membrane	43.22	37.44
Bra012621.1-P	Field mustard	plasma membrane	43.03	36.89
Bra019135.1-P	Field mustard	plasma membrane	41.72	35.94
Bra019907.1-P	Field mustard	plasma membrane	40.41	35.27
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.91	34.67
Bra040475.1-P	Field mustard	cytosol	41.53	34.5
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	43.12	34.43
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.57	34.36
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	42.94	34.3
Bra004484.1-P	Field mustard	cytosol	40.97	34.11
Bra003445.1-P	Field mustard	peroxisome	39.66	33.81
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.32	33.78
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	39.94	33.73
Bra017539.1-P	Field mustard	plasma membrane	29.93	31.04
Bra005036.1-P	Field mustard	mitochondrion	38.73	29.4
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	38.45	29.29
GSMUA_Achr1P18340_001	Banana	plasma membrane	57.25	29.25
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	37.98	29.0

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra025328	EnsemblPlants:Bra025328.1	EnsemblPlants:Bra025328.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M4E972	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221
PANTHER:PTHR24221:SF381	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000253FBC6
SEG:seg	:	:	:	:	:

Description

AT3G28415 (E=0.0) | P-glycoprotein, putative

Coordinates

chrA06:+:22134299..22138899

Molecular Weight (calculated)

117268.0 Da

IEP (calculated)

9.146

GRAVY (calculated)

0.092

Length

1069 amino acids

Sequence
(BLAST)

0001: MLWRLAIVGF PFIVLLLIPG LMYGRSLISI TRKIREEYKE AGSIAEQAIS LVRTVYAFGS ETKLIAKFSA ALEGSMKLGL RQGLAKGLAL GSNGIIYAIW
0101: GFMNWYGSRM VMYHGAKGGN IFAVIMCVTS GGISLGRGFS NLKYFSEVVV AGEKITKMIK RVPGIDSDNM EGQVLNNFKG EVHFNHVKFM YPSRPETPIF
0201: EDLCLRIPSG KTVALVGGNG SGKSTVISLL QRFYDPVAGE VLIDDVPINK LQVKWLRSQM GLVGQEPVLF ATSIKQNILF GKEDASMDEV MEAAKASNAH
0301: TFISQFPHGY KTQVGERRVQ MSGGQKQRIA IARAIIKLPK ILLLDEATST LDSESERVVL EALDNASAGR TTIVIVAHRL STIRNADVIC VVHNGCIVET
0401: GSHEELMENL DGHYTSLVRL QQMENEEYDV NISVRVQGGQ LSILSKDLKY SPKLSFVDSR SNLATNSTID SSLSGSIHKD KKTRVPSFKR LMAMNRPEWK
0501: HAMCGCLSAA LYGAVQPLNA YVVGSMVSMY FLTSHEKIRE KTRIYVLVFV GLALFVFLTN IVQHYSFAYM GENLTKRIRE KMLTKMLTFE VNWFDEGQNS
0601: SGAACSRLAK EANVRSLIGE RVSLLVQTIS GVAIACTLGL VIAWRLAIVM IAVQPVVVVC FYTQRILLKS MSKKAIKAQD ESCKLAAEAV SNIRTIIAFS
0701: SQERIFKLLN RVQEGPRRES VRQSLLAGIV LGTSRSLLAC TTVLNYWYGG RLIADGKIVA KAFFEMFMIF VSTGRAIADA GTMTTDLAKG SDAVGSVFAV
0801: LDRCTTIEPE DPNGYLPEKI KGIISFVNVD FAYPTRPNVV IFKDFSIEIE EGKSTAIVGP SGSGKSTIIS LIERFYDPLK GSVRIDGRDL KSYHLRSLRQ
0901: HIALVSQEPA LFTGTIRENI LYGAASENID ESEIIEAAKA ANAHEFITSL SNGYDTNCGD RGVQLSGGQK QRIAIARAVL KNPSVLLLDE ATSALDSQSE
1001: RMVQDALERV MVGRTSVVIS HRLSTIQNCD TIAVLDNGKV VECGDHSSLL AKGPTGAYFS LVSLQRNLC

Best Arabidopsis Sequence Match ( AT3G28360.1 )
(BLAST)

0001: MKTWGSMRSI FMHADGVDWM LMGLGLIGAV GDGFITPILF FITAMLLNDF GSFSFNDETF MQPISKNALA MLYVACASWV ICFLEGYCWT RTGERQAAKM
0101: RERYLRAVLR QDVGYFDLHV TSTSDIITSV SSDSLVIQDF LSEKLPNILM NASAFVGSYI VGFMLLWRLT IVGFPFIILL LIPGLMYGRA LIGISRKIRE
0201: EYNEAGSIAE QAISSVRTVY AFVSEKKMIE KFSDALQGSV KLGLRQGLAK GIAIGSNGIV YAIWGFLTWY GSRMVMNYGY KGGTVSTVTV CVTFGGTALG
0301: QALSNLKYFS EAFVAGERIQ KMIKRVPDID SDNLNGHILE TIRGEVEFNN VKCKYPSRPE TLIFDDLCLK IPSGKTVALV GGSGSGKSTV ISLLQRFYDP
0401: NEGDILIDSV SINNMQVKWL RSQMGMVSQE PSLFATSIKE NILFGKEDAS FDEVVEAAKA SNAHNFISQF PHGYQTQVGE RGVHMSGGQK QRIAIARALI
0501: KSPIILLLDE ATSALDLESE RVVQEALDNA SVGRTTIVIA HRLSTIRNAD IICVLHNGCI VETGSHDKLM EIDGKYTSLV RLQQMKNEES CDNTSVGVKE
0601: GRVSSLRNDL DYNPRDLAHS MSSSIVTNLS DSIPQDKKPL VPSFKRLMAM NRPEWKHALC GCLSASLGGA VQPIYAYSSG LMISVFFLTN HEQIKENTRI
0701: YVLLFFGLAL FTFFTSISQQ YSFSYMGEYL TKRIREQMLS KILTFEVNWF DEEENSSGAI CSRLAKDANV VRSLVGERMS LLVQTISTVM VACTIGLVIA
0801: WRFTIVMISV QPVIIVCYYI QRVLLKNMSK KAIIAQDESS KLAAEAVSNI RTITTFSSQE RIMKLLERVQ EGPRRESARQ SWLAGIMLGT TQSLITCTSA
0901: LNFWYGGKLI ADGKMVSKAF FELFLIFKTT GRAIAEAGTM TTDLAKGSNS VDSVFTVLDR RTTIEPENPD GYILEKIKGQ ITFLNVDFAY PTRPNMVIFN
1001: NFSIEIHEGK STAIVGPSRS GKSTVIGLIE RFYDPLQGIV KIDGRDIRSY HLRSLRQHMS LVSQEPTLFA GTIRENIMYG RASNKIDESE IIEAGKTANA
1101: HEFITSLSDG YDTYCGDRGV QLSGGQKQRI AIARTILKNP SILLLDEATS ALDSQSERVV QDALEHVMVG KTSVVIAHRL STIQNCDTIA VLDKGKVVES
1201: GTHASLLAKG PTGSYFSLVS LQRKVRYV

Arabidopsis Description

ABCB16ABC transporter B family member 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSJ8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.