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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002763.1-P
Bra006834.1-P
Bra006895.1-P
Bra008105.1-P
Bra012823.1-P
Bra015983.1-P
Bra035648.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28860.1 Bra008105.1-P AT1G73590.1 17237354
AT3G28860.1 Bra015983.1-P AT1G73590.1 17237354
AT3G28860.1 Bra006895.1-P AT3G21640.1 14517332
AT3G28860.1 Bra012823.1-P AT3G21640.1 14517332
AT3G28860.1 Bra002763.1-P AT5G57090.1 17237354
AT3G28860.1 Bra006834.1-P AT5G57090.1 17237354
AT3G28860.1 Bra035648.1-P AT5G57090.1 17237354
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86408 Canola plasma membrane 98.72 99.92
Bra039042.1-P Field mustard plasma membrane 97.04 97.04
AT3G28860.1 Thale cress plasma membrane 96.96 96.96
PGSC0003DMT400003590 Potato plasma membrane 90.26 90.47
KRH18485 Soybean endoplasmic reticulum, mitochondrion 90.18 90.39
Solyc02g087870.2.1 Tomato plasma membrane 90.1 90.31
KRG93519 Soybean cytosol, peroxisome, plasma membrane 89.78 89.92
VIT_14s0108g00430.t01 Wine grape cytosol, peroxisome, plasma membrane 89.14 89.28
GSMUA_Achr8P24160_001 Banana plasma membrane 77.4 85.98
Os04t0459000-01 Rice plasma membrane 82.83 82.37
TraesCS2D01G322600.1 Wheat cytosol, peroxisome, plasma membrane 82.19 81.47
TraesCS2B01G341800.2 Wheat cytosol, peroxisome, plasma membrane 82.19 81.41
EES12287 Sorghum cytosol, peroxisome, plasma membrane 81.79 81.14
TraesCS2A01G344300.1 Wheat cytosol, peroxisome, plasma membrane 81.79 81.08
HORVU2Hr1G080200.1 Barley plasma membrane 81.87 80.9
Zm00001d025590_P002 Maize cytosol, nucleus, plasma membrane 82.11 80.75
EES12952 Sorghum cytosol, peroxisome, plasma membrane 80.83 79.94
Zm00001d002119_P006 Maize cytosol 79.87 78.99
TraesCS2B01G550700.2 Wheat plasma membrane 79.23 78.92
Zm00001d026426_P005 Maize cytosol 80.11 78.79
TraesCS2D01G523100.2 Wheat cytosol 79.63 78.44
TraesCS2A01G521400.2 Wheat cytosol, peroxisome, plasma membrane 79.31 78.44
Os04t0642000-01 Rice cytosol, peroxisome, plasma membrane 38.26 78.27
HORVU2Hr1G115180.1 Barley cytosol, peroxisome, plasma membrane 79.39 78.27
GSMUA_Achr4P09980_001 Banana plasma membrane 71.17 77.88
Bra032855.1-P Field mustard cytosol 6.47 68.64
Bra013936.1-P Field mustard plasma membrane 50.08 50.81
Bra032856.1-P Field mustard plasma membrane 50.0 50.52
Bra019907.1-P Field mustard plasma membrane 49.36 50.45
Bra023087.1-P Field mustard cytosol, nucleus, plasma membrane 52.8 49.37
Bra019135.1-P Field mustard plasma membrane 48.88 49.32
Bra017216.1-P Field mustard cytosol, nucleus, plasma membrane 52.48 49.1
Bra004484.1-P Field mustard cytosol 47.04 45.87
Bra025328.1-P Field mustard endoplasmic reticulum, golgi 38.82 45.46
Bra040475.1-P Field mustard cytosol 46.65 45.38
Bra025326.1-P Field mustard plasma membrane 44.89 45.18
Bra012621.1-P Field mustard plasma membrane 44.73 44.91
Bra003490.1-P Field mustard cytosol, nucleus, plasma membrane 45.93 44.5
Bra025331.1-P Field mustard plasma membrane 40.18 44.16
Bra030503.1-P Field mustard cytosol, peroxisome, plasma membrane 44.81 43.97
Bra002094.1-P Field mustard cytosol, peroxisome, plasma membrane 42.81 43.54
Bra033331.1-P Field mustard cytosol, nucleus, plasma membrane 43.77 43.29
Bra003445.1-P Field mustard peroxisome 43.05 42.98
Bra025425.1-P Field mustard peroxisome, plasma membrane, vacuole 41.29 41.66
Bra017539.1-P Field mustard plasma membrane 32.03 38.89
Bra014756.1-P Field mustard cytosol, golgi, peroxisome 41.37 37.0
Bra005036.1-P Field mustard mitochondrion 41.45 36.86
Bra000136.1-P Field mustard cytosol, mitochondrion, peroxisome 41.21 36.78
Protein Annotations
Gene3D:1.20.1560.10MapMan:11.2.4.3Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ABC1_TM_domInterPro:ABC1_TM_sf
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEnsemblPlantsGene:Bra025359EnsemblPlants:Bra025359.1EnsemblPlants:Bra025359.1-PGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887
GO:GO:0042626GO:GO:0055085InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640UniProt:M4E9A3
InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664ScanProsite:PS00211PFscan:PS50893PFscan:PS50929
PANTHER:PTHR24221PANTHER:PTHR24221:SF382SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123TMHMM:TMhelix
UniParc:UPI000253FB52SEG:seg::::
Description
AT3G28860 (E=0.0) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter
Coordinates
chrA06:+:22002574..22008762
Molecular Weight (calculated)
136761.0 Da
IEP (calculated)
8.161
GRAVY (calculated)
0.122
Length
1252 amino acids
Sequence
(BLAST)
0001: MSETTADTKP VPPAEAEKKK EESLPFFKLF SFADKFDYLL MTTGTLGAIV HGSSMPVFFL LFGEMVNGFG KNQMDLHQMT HEVSKYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWRLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALSSY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRSGTTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGFKLME IINQRPTIIQ DPLDGKCLDQ VRGDIEFKDV TFSYPSRPDV IIFRNFSIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN NGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KAGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPQ NYFYRLLKLN APEWPYSIMG AVGSVLSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGIY AVIAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILATF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSFYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS EGKSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI DFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLGGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVME AARSANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDSIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Arabidopsis Description
ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.