Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P15720_001 | |
| GSMUA_Achr6P12690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G28860.1 | GSMUA_Achr6P12690_001 | AT3G21640.1 | 14517332 |
| AT3G28860.1 | GSMUA_Achr1P15720_001 | AT5G57090.1 | 17237354 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P24160_001 | Banana | plasma membrane | 81.56 | 82.79 |
| Os04t0642000-01 | Rice | cytosol, peroxisome, plasma membrane | 43.27 | 80.88 |
| VIT_14s0108g00430.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 81.38 | 74.48 |
| Os04t0459000-01 | Rice | plasma membrane | 81.29 | 73.87 |
| KRH18485 | Soybean | endoplasmic reticulum, mitochondrion | 80.24 | 73.5 |
| PGSC0003DMT400003590 | Potato | plasma membrane | 79.98 | 73.26 |
| KRG93519 | Soybean | cytosol, peroxisome, plasma membrane | 79.98 | 73.2 |
| Solyc02g087870.2.1 | Tomato | plasma membrane | 79.9 | 73.18 |
| EES12287 | Sorghum | cytosol, peroxisome, plasma membrane | 80.51 | 72.98 |
| TraesCS2B01G341800.2 | Wheat | cytosol, peroxisome, plasma membrane | 79.9 | 72.31 |
| TraesCS2D01G322600.1 | Wheat | cytosol, peroxisome, plasma membrane | 79.81 | 72.29 |
| TraesCS2A01G344300.1 | Wheat | cytosol, peroxisome, plasma membrane | 79.72 | 72.21 |
| Zm00001d025590_P002 | Maize | cytosol, nucleus, plasma membrane | 80.16 | 72.03 |
| CDX86408 | Canola | plasma membrane | 77.88 | 72.03 |
| EES12952 | Sorghum | cytosol, peroxisome, plasma membrane | 79.63 | 71.96 |
| HORVU2Hr1G080200.1 | Barley | plasma membrane | 79.28 | 71.59 |
| CDY00109 | Canola | plasma membrane | 77.71 | 71.41 |
| Zm00001d026426_P005 | Maize | cytosol | 79.37 | 71.33 |
| Zm00001d002119_P006 | Maize | cytosol | 78.85 | 71.25 |
| Bra025359.1-P | Field mustard | plasma membrane | 77.88 | 71.17 |
| Bra039042.1-P | Field mustard | plasma membrane | 77.88 | 71.17 |
| TraesCS2B01G550700.2 | Wheat | plasma membrane | 78.15 | 71.12 |
| AT3G28860.1 | Thale cress | plasma membrane | 77.8 | 71.09 |
| CDY20012 | Canola | plasma membrane | 77.8 | 71.03 |
| CDY65012 | Canola | plasma membrane | 77.8 | 71.03 |
| HORVU2Hr1G115180.1 | Barley | cytosol, peroxisome, plasma membrane | 78.58 | 70.79 |
| TraesCS2A01G521400.2 | Wheat | cytosol, peroxisome, plasma membrane | 78.15 | 70.62 |
| TraesCS2D01G523100.2 | Wheat | cytosol | 78.15 | 70.34 |
| GSMUA_Achr8P29860_001 | Banana | endoplasmic reticulum | 40.3 | 41.68 |
| GSMUA_Achr4P04430_001 | Banana | cytosol, peroxisome, plasma membrane | 49.13 | 41.48 |
| GSMUA_Achr4P12130_001 | Banana | cytosol | 47.64 | 40.46 |
| GSMUA_Achr1P25070_001 | Banana | plasma membrane | 31.12 | 39.29 |
| GSMUA_Achr2P20180_001 | Banana | plasma membrane | 32.08 | 37.64 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 38.99 | 35.62 |
| GSMUA_Achr9P16700_001 | Banana | plasma membrane | 39.16 | 35.28 |
| GSMUA_Achr4P17010_001 | Banana | peroxisome | 26.14 | 27.06 |
| GSMUA_Achr1P18340_001 | Banana | plasma membrane | 40.38 | 22.08 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | EnsemblPlantsGene:GSMUA_Achr4G09980_001 |
| EnsemblPlants:GSMUA_Achr4P09980_001 | EnsemblPlants:GSMUA_Achr4T09980_001 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | UniProt:M0SML5 |
| InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 |
| PANTHER:PTHR24221 | PANTHER:PTHR24221:SF382 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix |
| UniParc:UPI000294B416 | SEG:seg | : | : | : | : |
Description
ABC transporter B family member 19 [Source:GMGC_GENE;Acc:GSMUA_Achr4G09980_001]
Coordinates
chr4:-:7288465..7295705
Molecular Weight (calculated)
124798.0 Da
IEP (calculated)
7.981
GRAVY (calculated)
0.172
Length
1144 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAGSVGAVV HGSAMPVFFL LFGDLVNGFG KNQTHLSVMT HEVSKYALYF VYLGLVVCLS SYAEIGCWMY TGERQASALR RRYLEAVLRQ DVGFFDTDAR
0101: TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FISAWRLALL SVAVIPGIAF AGGLYAYTLT GLTSKSRESY ANAGIVAEQT IAQVRTVYSF
0201: VGENKALNSY SEAIQNTLKL GYKAGMAKGL GIGCTYGIAC MSWALVFWYA GVFIRNGQTD GGKAFTAIFS AIVGGIKDLT HKVASLGSLY DVLYNANANL
0301: LGQSFSNLGA FSKGKAAGYK LLEIIRQKPS IIQDQSDGKC LEEVHGNIEF KDVTFSYPSR PDVIIFRDFS LFFPAGKTVA VVGGSGSGKS TVVALIERFY
0401: DPNQGLVLLD NVDIKTLQLK WLREQIGLVN QEPALFATTI LENILYGKPD ATIGEVEAAA SAANAHSFIS QLPSAYNTQV IISFTCKTLM MLLNLSKRWY
0501: FNVQKAADEN VGERGVQLSG GQKQRIAIAR AMLKNPKILL LDEATSALDA GSESIVQEAL DRLMVGRTTV VVAHRLSTIR NVDMIAVIQQ GQVVETGAHE
0601: DLLAKGSSGA YASLIRFQEM ARNRDFGGPS TRRSRYQYST GADGRIEMLN APEWPYTIMG AIGSVLSGFI GPTFAIVMSN MIEVFYYRDP NAMERKTREY
0701: VFIYIGTGLY AVVAYLVQHY FFSIMGENLT TRVRRMMLAA ILRNEVGWFD EEENNSSLVA ARLANDAADV KSAIAERISV ILQNMTSLLT SFIVGFVVEW
0801: RVALLILATF PLLVLANFAQ VPRIHLGYFL VATHGVLEAV CGPTVSLFSL FPSDSSFFVL YSLLGLNLNT QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR
0901: TVAAFNAQAK ILSLFCNELR IPQRRSFRRS QTSGASTFSK VIKSIRSVFA ILNRGTRVEP DDPEAEHVDS VRGEIELRHV DFAYPSRPDV PIFKDFNLRI
1001: RAGQSHALPV LFAASIMENI AYGKDGATEE ETAVGERGVQ LSGGQKQRIA IARAVLKDPA VLLLDEATSA LDAESECVLQ EALERLMKGR TTVLVAHRLS
1101: TIRGVDSIGV VQEGRIVEQG SHSELVARPD GAYSRLLQLQ HYHV
0101: TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FISAWRLALL SVAVIPGIAF AGGLYAYTLT GLTSKSRESY ANAGIVAEQT IAQVRTVYSF
0201: VGENKALNSY SEAIQNTLKL GYKAGMAKGL GIGCTYGIAC MSWALVFWYA GVFIRNGQTD GGKAFTAIFS AIVGGIKDLT HKVASLGSLY DVLYNANANL
0301: LGQSFSNLGA FSKGKAAGYK LLEIIRQKPS IIQDQSDGKC LEEVHGNIEF KDVTFSYPSR PDVIIFRDFS LFFPAGKTVA VVGGSGSGKS TVVALIERFY
0401: DPNQGLVLLD NVDIKTLQLK WLREQIGLVN QEPALFATTI LENILYGKPD ATIGEVEAAA SAANAHSFIS QLPSAYNTQV IISFTCKTLM MLLNLSKRWY
0501: FNVQKAADEN VGERGVQLSG GQKQRIAIAR AMLKNPKILL LDEATSALDA GSESIVQEAL DRLMVGRTTV VVAHRLSTIR NVDMIAVIQQ GQVVETGAHE
0601: DLLAKGSSGA YASLIRFQEM ARNRDFGGPS TRRSRYQYST GADGRIEMLN APEWPYTIMG AIGSVLSGFI GPTFAIVMSN MIEVFYYRDP NAMERKTREY
0701: VFIYIGTGLY AVVAYLVQHY FFSIMGENLT TRVRRMMLAA ILRNEVGWFD EEENNSSLVA ARLANDAADV KSAIAERISV ILQNMTSLLT SFIVGFVVEW
0801: RVALLILATF PLLVLANFAQ VPRIHLGYFL VATHGVLEAV CGPTVSLFSL FPSDSSFFVL YSLLGLNLNT QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR
0901: TVAAFNAQAK ILSLFCNELR IPQRRSFRRS QTSGASTFSK VIKSIRSVFA ILNRGTRVEP DDPEAEHVDS VRGEIELRHV DFAYPSRPDV PIFKDFNLRI
1001: RAGQSHALPV LFAASIMENI AYGKDGATEE ETAVGERGVQ LSGGQKQRIA IARAVLKDPA VLLLDEATSA LDAESECVLQ EALERLMKGR TTVLVAHRLS
1101: TIRGVDSIGV VQEGRIVEQG SHSELVARPD GAYSRLLQLQ HYHV
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Arabidopsis Description
ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.