Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P15720_001 | |
| GSMUA_Achr6P12690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36910.1 | GSMUA_Achr6P12690_001 | AT3G21640.1 | 14517332 |
| AT2G36910.1 | GSMUA_Achr1P15720_001 | AT5G57090.1 | 17237354 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P12130_001 | Banana | cytosol | 85.31 | 85.82 |
| TraesCS7A01G284900.1 | Wheat | plasma membrane | 72.03 | 78.33 |
| AT2G36910.1 | Thale cress | peroxisome | 71.96 | 75.82 |
| KRG96023 | Soybean | cytosol, peroxisome, plasma membrane | 74.46 | 75.35 |
| Solyc09g008240.2.1 | Tomato | peroxisome | 72.84 | 75.11 |
| KRH67730 | Soybean | cytosol, peroxisome, plasma membrane | 74.39 | 75.11 |
| PGSC0003DMT400009924 | Potato | peroxisome | 73.73 | 74.94 |
| TraesCS7B01G181700.1 | Wheat | cytosol | 75.42 | 74.71 |
| KRH32507 | Soybean | cytosol, nucleus, plasma membrane | 74.02 | 74.68 |
| VIT_08s0007g05060.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 74.61 | 74.67 |
| TraesCS7D01G284100.1 | Wheat | cytosol | 75.5 | 74.4 |
| KRH19897 | Soybean | cytosol, peroxisome, plasma membrane | 73.43 | 74.2 |
| Bra023087.1-P | Field mustard | cytosol, nucleus, plasma membrane | 73.06 | 73.94 |
| CDY46744 | Canola | cytosol, peroxisome, plasma membrane | 72.99 | 73.92 |
| Bra017216.1-P | Field mustard | cytosol, nucleus, plasma membrane | 72.92 | 73.84 |
| CDX79704 | Canola | plasma membrane | 72.92 | 73.68 |
| Os08t0564300-04 | Rice | plasma membrane | 72.84 | 73.44 |
| HORVU7Hr1G063020.3 | Barley | cytosol | 75.2 | 72.22 |
| Zm00001d031871_P001 | Maize | cytosol | 75.2 | 71.96 |
| OQU80682 | Sorghum | plasma membrane | 72.25 | 63.53 |
| GSMUA_Achr8P24160_001 | Banana | plasma membrane | 45.46 | 54.66 |
| GSMUA_Achr4P09980_001 | Banana | plasma membrane | 41.48 | 49.13 |
| GSMUA_Achr8P29860_001 | Banana | endoplasmic reticulum | 36.53 | 44.76 |
| GSMUA_Achr1P25070_001 | Banana | plasma membrane | 29.37 | 43.93 |
| GSMUA_Achr2P20180_001 | Banana | plasma membrane | 29.67 | 41.23 |
| GSMUA_Achr9P16700_001 | Banana | plasma membrane | 37.34 | 39.84 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 36.38 | 39.38 |
| GSMUA_Achr4P17010_001 | Banana | peroxisome | 21.99 | 26.97 |
| GSMUA_Achr1P18340_001 | Banana | plasma membrane | 36.16 | 23.42 |
Protein Annotations
| MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf | InterPro:ABC_transporter-like |
| InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | EnsemblPlantsGene:GSMUA_Achr4G04430_001 |
| EnsemblPlants:GSMUA_Achr4P04430_001 | EnsemblPlants:GSMUA_Achr4T04430_001 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | UniProt:M0SL10 |
| InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 |
| PANTHER:PTHR24221 | PANTHER:PTHR24221:SF119 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix |
| UniParc:UPI000294A480 | SEG:seg | : | : | : | : |
Description
ABC transporter B family member 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04430_001]
Coordinates
chr4:+:3490727..3495679
Molecular Weight (calculated)
147152.0 Da
IEP (calculated)
7.537
GRAVY (calculated)
0.070
Length
1355 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSQQGYGHEE EMIKRRVVVE EWRQPELQAF HLCSPPHSAA NPEVHHQANQ LVIEVAERGG GGLVAAADAT SLAASLAVPV SSSSASGREM EAANGNVKVE
0101: DPQPATVASR QEDVKPAPEA PTVGFSQLFR FADGLDCLLM AVGTAGAIVH GSSLPIFLRF FANLVNSFGS NAGDPDTMVR EVVKYAFYFL VVGAAIWASS
0201: WAEISCWMWT GERQSTQMRI KYLEAALNQD VRYFDTEVRT SDVVYAINAD AVIVQDAISE KLGNFIHYMA TFVSGFVVGF TAAWQLALVT LAVVPLIAII
0301: GGIHTFTLTK LSSKSQDALV RASNIAEQAL AQIRTVQSFV GESSVLQAYS SALRVAQKIG YRSGFAKGLG LGATYFTVFC CYALLLWYGG HLVRHHHTNG
0401: GLAISTMFAV MIGGLALGQS APSMAAFAKA RVAAAKIYQT IEHEPSIDRK NDTGIELGAI TGLVELNNVD FAYPSRPDVP VLCNFSLTVA AGKTLALVGS
0501: SGSGKSTVVS LIERFYDPTS GQILFDGHDI KTLKLRWLRQ QIGLVSQEPA LFATTIKENL LLGREDATQA EIEEAARVAN AHSFIVKLRD GYDSQVGERG
0601: LQLSGGQRQR IAIARAMLKN PAILLLDEAT SALDSESEKL VQEALDRFMI GRTTLVIAHR LSTIRKADFV AVLQRGSVTE IGTHEDLMAN VPGGAAQGTT
0701: NSLNSVSSPI ITRNSSYGRS PYSRRLSDFS TSEFSISIDP SHRTKKLAFR DQASSFLRLA KMNSPEWTYA LLGSIGSMVC GSMSAFFAYV LSAVLSAYYA
0801: QDYNYMRREI GKYCYLMLGV SSAALLFNTM QHLFWDVVGE NLTKRVREKM LTSVLRNEIA WFDREENGSA RIAGRLTADA HNVRSAIGDR ISVIVQNTSL
0901: MLVAFTAGFV LEWRLALVLI AVFPVVVAAT VLQKMFMKGF SGDLEVAHAK ATQIAGEAVA NVRTVAAFNS EEKITQLFAA NLQSPLQRCF WKGQVAGGSF
1001: GVAQFLLYAS YALGLWYASW LVKHGFSDFS KTIRVFMVLM VSANGAAEAL TLAPDFIKGG RAMRSVFEVI DRKTEVEPDD PDAAPVSDRL RGEVELKHVD
1101: FAYPSCPDMP VFRDLTLRAR AGKMLALVGP SGCGKSSVIS LIQRFYEPTS GRVLIDGKDI RKYNLKSLRQ AIAVVPQEPC LFAATILENI AYGREAATEA
1201: EVVEAATMAN ADKFISGLPD GYRTWVGERG VQLSGGQRQR IAIARALVKK APMMLLDEAT SALDAESERS VQEALERSGV GRTTVVVAHR LATIRNAHVI
1301: AVIDEGRVVE QGPHSHLLKH HPDGCYARML QLQRFTNGTT VGAPPPPSTD ARETE
0101: DPQPATVASR QEDVKPAPEA PTVGFSQLFR FADGLDCLLM AVGTAGAIVH GSSLPIFLRF FANLVNSFGS NAGDPDTMVR EVVKYAFYFL VVGAAIWASS
0201: WAEISCWMWT GERQSTQMRI KYLEAALNQD VRYFDTEVRT SDVVYAINAD AVIVQDAISE KLGNFIHYMA TFVSGFVVGF TAAWQLALVT LAVVPLIAII
0301: GGIHTFTLTK LSSKSQDALV RASNIAEQAL AQIRTVQSFV GESSVLQAYS SALRVAQKIG YRSGFAKGLG LGATYFTVFC CYALLLWYGG HLVRHHHTNG
0401: GLAISTMFAV MIGGLALGQS APSMAAFAKA RVAAAKIYQT IEHEPSIDRK NDTGIELGAI TGLVELNNVD FAYPSRPDVP VLCNFSLTVA AGKTLALVGS
0501: SGSGKSTVVS LIERFYDPTS GQILFDGHDI KTLKLRWLRQ QIGLVSQEPA LFATTIKENL LLGREDATQA EIEEAARVAN AHSFIVKLRD GYDSQVGERG
0601: LQLSGGQRQR IAIARAMLKN PAILLLDEAT SALDSESEKL VQEALDRFMI GRTTLVIAHR LSTIRKADFV AVLQRGSVTE IGTHEDLMAN VPGGAAQGTT
0701: NSLNSVSSPI ITRNSSYGRS PYSRRLSDFS TSEFSISIDP SHRTKKLAFR DQASSFLRLA KMNSPEWTYA LLGSIGSMVC GSMSAFFAYV LSAVLSAYYA
0801: QDYNYMRREI GKYCYLMLGV SSAALLFNTM QHLFWDVVGE NLTKRVREKM LTSVLRNEIA WFDREENGSA RIAGRLTADA HNVRSAIGDR ISVIVQNTSL
0901: MLVAFTAGFV LEWRLALVLI AVFPVVVAAT VLQKMFMKGF SGDLEVAHAK ATQIAGEAVA NVRTVAAFNS EEKITQLFAA NLQSPLQRCF WKGQVAGGSF
1001: GVAQFLLYAS YALGLWYASW LVKHGFSDFS KTIRVFMVLM VSANGAAEAL TLAPDFIKGG RAMRSVFEVI DRKTEVEPDD PDAAPVSDRL RGEVELKHVD
1101: FAYPSCPDMP VFRDLTLRAR AGKMLALVGP SGCGKSSVIS LIQRFYEPTS GRVLIDGKDI RKYNLKSLRQ AIAVVPQEPC LFAATILENI AYGREAATEA
1201: EVVEAATMAN ADKFISGLPD GYRTWVGERG VQLSGGQRQR IAIARALVKK APMMLLDEAT SALDAESERS VQEALERSGV GRTTVVVAHR LATIRNAHVI
1301: AVIDEGRVVE QGPHSHLLKH HPDGCYARML QLQRFTNGTT VGAPPPPSTD ARETE
0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA
Arabidopsis Description
ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.