CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88769
EES07974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	EES07974	AT3G21640.1	14517332
AT2G36910.1	EER88769	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G284900.1	Wheat	plasma membrane	71.77	88.76
Zm00001d031871_P001	Maize	cytosol	78.33	85.24
TraesCS7D01G284100.1	Wheat	cytosol	71.97	80.65
TraesCS7B01G181700.1	Wheat	cytosol	71.58	80.63
Os08t0564300-04	Rice	plasma membrane	69.76	79.99
HORVU7Hr1G063020.3	Barley	cytosol	71.71	78.31
AT2G36910.1	Thale cress	peroxisome	62.95	75.43
GSMUA_Achr4P12130_001	Banana	cytosol	64.7	74.02
Solyc09g008240.2.1	Tomato	peroxisome	62.95	73.82
KRH32507	Soybean	cytosol, nucleus, plasma membrane	63.98	73.42
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	63.4	72.96
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	63.4	72.8
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	63.92	72.75
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	63.21	72.63
PGSC0003DMT400009924	Potato	peroxisome	62.82	72.62
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	63.53	72.25
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	62.69	72.2
CDY46744	Canola	cytosol, peroxisome, plasma membrane	62.69	72.2
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	62.69	72.14
CDX79704	Canola	plasma membrane	62.56	71.89
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	42.18	51.51
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	41.34	50.32
EES05688	Sorghum	plasma membrane	39.2	47.94
OQU77362	Sorghum	mitochondrion, plasma membrane	33.1	44.19
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	35.17	43.85
KXG32330	Sorghum	plastid	34.91	42.03
EES05229	Sorghum	plasma membrane	33.74	41.8
KXG33192	Sorghum	cytosol	33.94	41.21
KXG35311	Sorghum	plasma membrane	32.97	40.48
KXG32655	Sorghum	peroxisome	33.55	40.05
OQU79902	Sorghum	nucleus, peroxisome, plasma membrane	32.45	39.68
EES01319	Sorghum	cytosol	32.71	39.56
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	34.13	37.54
OQU79903	Sorghum	peroxisome	30.37	36.94
EER92449	Sorghum	plasma membrane	33.81	36.87
KXG25805	Sorghum	peroxisome, plastid	32.71	32.56
OQU78384	Sorghum	plasma membrane	33.48	27.36

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	UniProt:A0A1Z5RA91	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008361
GO:GO:0009506	GO:GO:0009605	GO:GO:0009606	GO:GO:0009607	GO:GO:0009624	GO:GO:0009628
GO:GO:0009637	GO:GO:0009639	GO:GO:0009640	GO:GO:0009719	GO:GO:0009733	GO:GO:0009791
GO:GO:0009908	GO:GO:0009926	GO:GO:0009958	GO:GO:0009987	GO:GO:0010315	GO:GO:0010328
GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0043481	GO:GO:0048443	GO:GO:0055085	GO:GO:0060919	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	EnsemblPlants:OQU80682	ProteinID:OQU80682	ProteinID:OQU80682.1	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221
PANTHER:PTHR24221:SF119	SMART:SM00382	EnsemblPlantsGene:SORBI_3007G163800	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI000B8B98A8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:59821905..59829921

Molecular Weight (calculated)

166852.0 Da

IEP (calculated)

9.428

GRAVY (calculated)

0.072

Length

1541 amino acids

Sequence
(BLAST)

0001: MLVGTLGALV HGCSLPVFLR FFADLVDSFG SHANDPDTMV RLVVKYAFYF LVVGAAIWAS SWAEISCWMW TGERQSTRMR IRYLDAALRQ DVSFFDTDVR
0101: ASDVIYAINA DAVVVQDAIS EKLGNLIHYM ATFVAGFVVG FTAAWQLALV TLAVVPLIAV IGGLSAAALA KLSSRSQDAL SGASGIAEQA LAQIRIVQAF
0201: VGEEREMRAY SAALAVAQKI GYRSGFAKGL GLGGTYFTVF CCYGLLLWYG GHLVRGNHTN GGLAIATMFS VMIGGLALGQ SAPSMAAFAK ARVAAAKIFR
0301: IIDHRPGISS RDGEDGGGVE LESVTGRVEM RGVDFAYPSR PDVPILRGFS LSVPAGKTIA LVGSSGSGKS TVVSLLERFY DPSAGQILLD GHDLKSLKLR
0401: WLRQQIGLVS QEPTLFATSI KENLLLGRDS QSATQAEMEE AARVANAHSF IVKLPDGYDT QVGERGLQLS GGQKQRIAIA RAMLKNPAIL LLDEATSALD
0501: SESEKLVQEA LDRFMIGRTT LVIAHRLSTI RKADVVAVLQ GGAVSEMGTH DELMAKGENG TYAKLIRMQE QAHEAALVNA RRSSARPSSA RNSVSSPIMT
0601: RNSSYGRSPY SRRLSDFSTS DFTLSIHDPH HHHRTMADKQ LAFRAGASSF LRLARMNSPE WAYALVGSLG SMVCGSFSAI FAYILSAVLS VYYAPDPRYM
0701: KREIAKYCYL LIGMSSAALL FNTVQHVFWD TVGENLTKRV REKMFAAVLR NEIAWFDADE NASARVAARL ALDAQNVRSA IGDRISVIVQ NSALMLVACT
0801: AGFVLQWRLA LVLLAVFPLV VGATVLQKMF MKGFSGDLEA AHARATQIAG EAVANLRTVA AFNAERKITG LFEANLRGPL RRCFWKGQIA GSGYGVAQFL
0901: LYASYALGLW YAAWLVKHGV SDFSRTIRVF MVLMVSANGA AETLTLAPDF VKGGRAMRSV FETIDRKTEV EPDDVDAAPV PERPKGEVEL KHVDFSYPSR
1001: PDIQVFRDLS LRARAGKTLA LVGPSGCGKS SVLALVQRFY EPTSGRVLLD GKDVRKYNLR ALRRVVAVVP QEPFLFAASI HDNIAYGREG ATEAEVVEAA
1101: TQANAHRFIS ALPEGYGTQV GERGVQLSGG QRQRIAIARA LVKQAAIMLL DEATSALDAE SERWLFEANL RGPLRRCFWK GQIAGSGYGV AQFLLYASYA
1201: LGLWYAAWLV KHGVSDFSRT IRVFMVLMVS ANGAAETLTL APDFVKGGRA MRSVFETIDR KTEVEPDDVD AAPVPERPKG EVELKHVDFS YPSRPDIQVF
1301: RDLSLRARAG KTLALVGPSG CGKSSVLALV QRFYEPTSGR VLLDGKDVRK YNLRALRRVV AVVPQEPFLF AASIHDNIAY GREGATEAEV VEAATQANAH
1401: RFISALPEGY GTQVGERGVQ LSGGQRQRIA IARALVKQAA IMLLDEATSA LDAESERCVQ EALERAGNGR TTIVVAHRLA TVRNAHTIAV IDDGKVVEQG
1501: SHSHLLKHHP DGCYARMLQL QRLTGGAAPG PPPSSSNGAA A

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.