Factsheet for Bra023087.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra006834.1-P
Bra006895.1-P
Bra008105.1-P
Bra012823.1-P
Bra015983.1-P
Bra035648.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	Bra008105.1-P	AT1G73590.1	17237354
AT2G36910.1	Bra015983.1-P	AT1G73590.1	17237354
AT2G36910.1	Bra006895.1-P	AT3G21640.1	14517332
AT2G36910.1	Bra012823.1-P	AT3G21640.1	14517332
AT2G36910.1	Bra002763.1-P	AT5G57090.1	17237354
AT2G36910.1	Bra006834.1-P	AT5G57090.1	17237354
AT2G36910.1	Bra035648.1-P	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46744	Canola	cytosol, peroxisome, plasma membrane	99.7	99.78
CDX79704	Canola	plasma membrane	99.48	99.33
AT2G36910.1	Thale cress	peroxisome	92.53	96.35
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	95.0	95.07
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	86.33	86.33
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	85.89	85.69
KRH32507	Soybean	cytosol, nucleus, plasma membrane	85.21	84.96
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	84.39	84.27
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	84.47	83.53
Solyc09g008240.2.1	Tomato	peroxisome	81.7	83.26
PGSC0003DMT400009924	Potato	peroxisome	82.82	83.2
TraesCS7A01G284900.1	Wheat	plasma membrane	73.41	78.89
GSMUA_Achr4P12130_001	Banana	cytosol	75.13	74.68
TraesCS7B01G181700.1	Wheat	cytosol	74.98	73.39
TraesCS7D01G284100.1	Wheat	cytosol	75.28	73.31
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	73.94	73.06
Os08t0564300-04	Rice	plasma membrane	72.37	72.1
HORVU7Hr1G063020.3	Barley	cytosol	75.13	71.3
Zm00001d031871_P001	Maize	cytosol	73.49	69.49
OQU80682	Sorghum	plasma membrane	72.14	62.69
Bra032855.1-P	Field mustard	cytosol	5.15	58.47
Bra025359.1-P	Field mustard	plasma membrane	49.37	52.8
Bra039042.1-P	Field mustard	plasma membrane	48.84	52.24
Bra013936.1-P	Field mustard	plasma membrane	45.78	49.68
Bra019135.1-P	Field mustard	plasma membrane	44.88	48.43
Bra032856.1-P	Field mustard	plasma membrane	44.44	48.02
Bra019907.1-P	Field mustard	plasma membrane	43.91	48.0
Bra012621.1-P	Field mustard	plasma membrane	41.6	44.67
Bra025326.1-P	Field mustard	plasma membrane	40.93	44.05
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	34.43	43.12
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.7	42.71
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.08	42.57
Bra025331.1-P	Field mustard	plasma membrane	36.15	42.49
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.06	42.49
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	40.1	42.42
Bra004484.1-P	Field mustard	cytosol	40.33	42.06
Bra003445.1-P	Field mustard	peroxisome	39.28	41.95
Bra040475.1-P	Field mustard	cytosol	39.88	41.49
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	37.94	40.93
Bra017539.1-P	Field mustard	plasma membrane	30.1	39.09
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	39.81	38.07
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	39.66	37.85
Bra005036.1-P	Field mustard	mitochondrion	39.43	37.5

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra023087	EnsemblPlants:Bra023087.1	EnsemblPlants:Bra023087.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M4E2T6
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF384	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI000253FF81	SEG:seg	:	:	:	:

Description

AT2G36910 (E=0.0) ATPGP1, PGP1, ABCB1 | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding

Coordinates

chrA03:+:8623846..8629151

Molecular Weight (calculated)

146738.0 Da

IEP (calculated)

7.631

GRAVY (calculated)

0.008

Length

1339 amino acids

Sequence
(BLAST)

0001: MSQESVQIEE EIKSLEQWRW SEMQGLELLP EPSSNSNSNS RNPETELQEH PPEMENGGGT PPPPPPATVE EPKKAEIRGV AFKELFRFAD GLDYVLMTIG
0101: SVGAFVHGCS LPLFLRFFAD LVNSFGSNAN NVDKMMQEVL KYALYFLVVG AAIWASSWAE ISCWMWTGER QTTKMRIKYL EAALNQDIQF FDTEVRTSDV
0201: VSAINTDAVM VQDAISEKLG NFIHYMATFV SGFIVGFTAV WQLALVTIAV VPLIAVIGGI HTTTLSKLSN KSQESLSQAG NIVEQTVVQI RVVMAFVGES
0301: RASQAYSSAL KTAQKLGYKT GFAKGMGLGA TYFVVFCCYA LLLWYGGYLV RHHLTNGGLA IATMFAVMIG GLGLGQSVPS MAAFAKAKVA AAKIFRIIDH
0401: KPTIERNSES GVELESVTGL VELKNVDFSY PSRPDVKILN DFTLSVPAGK TIALVGSSGS GKSTVVSLIE RFYDPTSGQV LLDGHDLKTL KLKWLRQQIG
0501: LVSQEPALFA TSIKENILLG RPDADQVEVE EAARVANAHS FIIKLPDGFD TQVGERGLQL SGGQKQRIAI ARAMLKNPAI LLLDEATSAL DSESEKLVQE
0601: ALDRFMIGRT TLIIAHRLST IRKADLVAVL QQGSVSEIGT HDELFAKGEN GIYSKLIKMQ EAAHETAMNN ARKSSARPSS ARNSVSSPII ARNSSYGRSP
0701: YSRRLSDFST TDFSLSVEAS SYPNYRHDKL PFKDQANSFW RLAKMNSPEW KYALVGSVGS VICGSLSAFF AYVLSAVLSI YYNPDHNYMI KQIDKYCYLL
0801: IGLSSAALIF NTLQHSFWDI VGENLTKRVR EKMLTAVLKN EMAWFDQEEN ESARISARLA LDANNVRSAI GDRISVIVQN TALMLVACTA GFVLQWRLAL
0901: VLVAVFPVVV AATVLQKMFM TGFSGDLEAA HAKGTQLAGE AIANVRTVAA FNSEAKIVRL YTANLEPPLK RCFWKGQIAG SGYGVAQFCL YASYALGLWY
1001: ASWLVKHGIS DFSKTIRVFM VLMVSANGAA ETLTLAPDFI KGGQAMRSVF ELLDRKTEIE PDDLDTTPVP DRLRGEVELK HIDFSYPSRP DIQVFRDLSL
1101: RARAGKTLAL VGPSGCGKSS VISLIQRFYE PSSGRVLIDG KDIRKYNLKA IRKHIAIVPQ EPCLFGTTIY ENIAYGHECA TEAEIIQAAT LASAHKFISA
1201: LPDGYKTYVG ERGVQLSGGQ KQRIAIARAL VRKAEIMLLD EATSALDAES ERSVQEALDQ ACSGRTSIVV AHRLSTIRNA HVIAVIDDGK VAEQGSHSHL
1301: LKNYPDGIYA RMIQLQRFTH TQVIGMTSGS SSRVKEDDA

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.