Factsheet for PGSC0003DMT400009924

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014752
PGSC0003DMT400017681
PGSC0003DMT400048251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	PGSC0003DMT400014752	AT1G73590.1	17237354
AT2G36910.1	PGSC0003DMT400017681	AT3G21640.1	14517332
AT2G36910.1	PGSC0003DMT400048251	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008240.2.1	Tomato	peroxisome	97.07	98.48
AT2G36910.1	Thale cress	peroxisome	82.22	85.23
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	85.82	84.49
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	84.7	84.32
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	84.7	84.13
KRH32507	Soybean	cytosol, nucleus, plasma membrane	84.55	83.92
CDY46744	Canola	cytosol, peroxisome, plasma membrane	83.2	82.88
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	83.2	82.82
CDX79704	Canola	plasma membrane	83.05	82.55
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	82.9	82.4
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	82.37	82.06
TraesCS7A01G284900.1	Wheat	plasma membrane	73.22	78.33
GSMUA_Achr4P12130_001	Banana	cytosol	76.14	75.35
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	74.94	73.73
TraesCS7B01G181700.1	Wheat	cytosol	75.47	73.54
TraesCS7D01G284100.1	Wheat	cytosol	75.62	73.31
Os08t0564300-04	Rice	plasma membrane	72.39	71.8
HORVU7Hr1G063020.3	Barley	cytosol	75.09	70.94
Zm00001d031871_P001	Maize	cytosol	74.19	69.84
OQU80682	Sorghum	plasma membrane	72.62	62.82
PGSC0003DMT400011703	Potato	cytosol	7.73	61.68
PGSC0003DMT400003590	Potato	plasma membrane	50.11	53.48
PGSC0003DMT400045176	Potato	peroxisome	46.74	49.56
PGSC0003DMT400049576	Potato	plasma membrane	41.34	43.76
PGSC0003DMT400007960	Potato	plasma membrane	41.34	43.66
PGSC0003DMT400048379	Potato	golgi, peroxisome, plasma membrane	37.21	43.62
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	41.94	43.43
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	39.38	43.32
PGSC0003DMT400027962	Potato	golgi, plasma membrane, vacuole	40.44	42.98
PGSC0003DMT400034908	Potato	plasma membrane	39.91	42.26
PGSC0003DMT400013988	Potato	plasma membrane	38.18	41.52
PGSC0003DMT400011930	Potato	peroxisome	39.38	40.79
PGSC0003DMT400069516	Potato	peroxisome	35.41	39.8
PGSC0003DMT400019085	Potato	plasma membrane	36.83	37.94
PGSC0003DMT400058977	Potato	plastid	39.23	34.25

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ProteinID:AAD10836	ProteinID:AAD10836.1
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	GO:GO:0060919	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M0ZX56
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	EnsemblPlantsGene:PGSC0003DMG400003889	PGSC:PGSC0003DMG400003889	EnsemblPlants:PGSC0003DMT400009924
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF384	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	EMBL:U52079	UniParc:UPI0002957FB1	SEG:seg

Description

P-glycoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400003889]

Coordinates

chr9:+:5129152..5136729

Molecular Weight (calculated)

145947.0 Da

IEP (calculated)

7.882

GRAVY (calculated)

0.030

Length

1333 amino acids

Sequence
(BLAST)

0001: MSQDSEEIKT IEHWKWSEMQ GVELVVSEDK NSNTPTTTTT TTTNSHQFEE TRMEVKKEEG GDVEKPSSPP PAVGFGELFR FADGLDCVLM IIGSLGAFVH
0101: GCSLPLFLRF FADLVNSFGS YANDVDKMTQ EVLKYAFYFL VVGAAIWASS WAEISCWMWT GERQTTKMRI KYLEAALNQD IQYFDTEVRT SDVVSAINTD
0201: AVVVQEAISE KLGNFIHYMA TFLSGFVVGF TAVWQLALVT LAVVPLIAVI GAIYTVTSAK LSSQSQEALS KAGNIVEQTV VQIRTVLVFV GEAKALQAYT
0301: AALRVSQKIG YKSGFSKGLG LGATYFTVFC CYALLLWYGG YLVRHHFTNG GLAIATMFAV MIGGLALGQS APSMTAFAKA RVAAAKIFRI IDHKPSVDRN
0401: AKTGLELDTV SGQLELKNVE FSYPSRPEIK ILNNFNLVVP AGKTIALVGS SGSGKSTVVS LIERFYDPTS GQLMLDGNDI KTLKLKWLRQ QIGLVSQEPA
0501: LFATSIKENI LLGRPDATQI EIEEAARVAN AHSFVIKLPD GFDTQVGERG LQLSGGQKQR IAIARAMLKN PAILLLDEAT SALDSESEKL VQEALDRFMI
0601: GRTTLVIAHR LSTIRKADLV AVLQQGSVSE IGSHDELMSK GENGMYAKLI KMQEAAHETA LSNARKSSAR PSSARNSVSS PIITRNSSYG RSPYSRRLSD
0701: FSTSDFSLSL DAAYSNYRNE KLAFKDQASS FGRLAKMNSP EWTYALIGSI GSVICGSLSA FFAYVLSAVL SVYYNPDHAY MSKQIAKYCY LLIGVSSAAL
0801: IFNTLQHYYW DVVGENLTKR VREKMLAAVL KMEMAWFDQE ENDSSRIAAR LSLDANNVRS AIGDRISVIM QNSALMLVAC TAGFVLQWRL ALVLIGVFPV
0901: VVAATVLQKM FMKGFSGDLE AAHAKATQLA GEAVANVRTV AAFNSETKIV NLFDSSLQIP LRRCFWKGQI AGSGYGIAQF LLYASYALGL WYASWLVKHG
1001: ISDFSKTIRV FMVLMVSANG AAETLTLAPD FIKGGRAMRS VFELLDRKTE VEPDDPDATA VPDRLRGEVE FKHVDFSYPT RPDVSIFRDL NLRARAGKTL
1101: ALVGPSGCGK SSVISLIERF YEPSSGRVII DGKDIRKYNL KSLRRHIAVV PQEPCLFATT IYENIAYGHE SATEAEITEA ATLANAHKFI SALPDGYKTF
1201: VGERGVQLSG GQKQRIAIAR AFLRKAELML LDEATSALDA ESERCVQEAL DRACAGKTTI VVAHRLSTIR NAHVIAVIDD GKVAEQGSHS HLLKNYSDGI
1301: YARMIQLQRF THGEAVNMAT GSTSSSHPKE DQD

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.