Factsheet for PGSC0003DMT400014752

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003590
PGSC0003DMT400009924

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73590.1	PGSC0003DMT400009924	AT2G36910.1	17237354
AT1G73590.1	PGSC0003DMT400003590	AT3G28860.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	97.88	98.36
VIT_17s0000g02420.t01	Wine grape	plasma membrane	79.15	81.82
KRH41847	Soybean	golgi, plasma membrane	79.8	81.26
KRH48642	Soybean	plasma membrane	79.48	80.66
CDX82059	Canola	golgi, plasma membrane	66.78	77.95
KRH39071	Soybean	plasma membrane	52.77	77.14
CDX96484	Canola	plasma membrane	66.78	76.64
CDY47745	Canola	golgi, plasma membrane	70.85	75.78
Bra008105.1-P	Field mustard	golgi, plasma membrane	72.96	72.73
AT1G73590.1	Thale cress	plasma membrane	73.62	72.67
Bra015983.1-P	Field mustard	plasma membrane	72.96	72.49
PGSC0003DMT400021600	Potato	golgi, plasma membrane	69.71	72.05
CDY72296	Canola	golgi, plasma membrane	51.79	70.2
PGSC0003DMT400072459	Potato	golgi, plasma membrane	66.29	69.34
PGSC0003DMT400078330	Potato	golgi, plasma membrane	67.59	63.46
PGSC0003DMT400015267	Potato	cytosol	45.28	59.91
PGSC0003DMT400048251	Potato	plasma membrane	60.42	58.8
PGSC0003DMT400079013	Potato	plasma membrane	47.88	55.68
PGSC0003DMT400003569	Potato	plasma membrane	22.31	52.69
PGSC0003DMT400017300	Potato	plasma membrane	8.31	51.52
PGSC0003DMT400046253	Potato	plasma membrane	26.71	46.2
PGSC0003DMT400017301	Potato	golgi, plasma membrane	12.87	44.63
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	20.68	39.56
CDX85566	Canola	cytosol	2.77	6.16

Protein Annotations

EntrezGene:102596833	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1A4U2	InterPro:Mem_trans	PFAM:PF03547
EnsemblPlantsGene:PGSC0003DMG400005750	PGSC:PGSC0003DMG400005750	EnsemblPlants:PGSC0003DMT400014752	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI000294AA0F	RefSeq:XP_006341527.1	:	:	:

Description

PIN1-like auxin transport protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005750]

Coordinates

chr3:+:58250333..58254563

Molecular Weight (calculated)

67137.9 Da

IEP (calculated)

9.356

GRAVY (calculated)

0.030

Length

614 amino acids

Sequence
(BLAST)

001: MITLSDFYHV MTAVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA ANNPYTMNIR FIAADTLQKL IVLGVLAVWA NVSKRGSLEW
101: SITLFSLSTL PNTLVMGIPL LKGMYGEFSG SLMVQIVVLQ CIIWYTLMLF MFEFRGARLL ISEQFPDTAG SIVSIHVDSD VMSLDGRQVL ETEAELKEDG
201: KLHVTVRKSN ASRSDIFSRR SGGFSSTTPR PSNLTNAEIY SLQSSRNPTP RGSSFNHTDF YSMVAGTAGR NSNFGANDVY GMSNNSRGPT PRPSNYEEES
301: GKSRFNNYLG GAAAPAPTQS NSNTNYPAPN PGMFSPSNNG TKAHKNTAKK GDQEGGKDLH MFVWSSSNSP VSDVFGGHDY TANLDQPAAP NKDVRVPISP
401: GKVEGQRNNN QENYMERDDF SFANRDGADQ MNNQDGEKAG ENKAKVMPPT SVMTRLILIM VWRKLIRNPN TYSSLFGLTW SLVSFRWNLK MPAIIAQSIS
501: ILSDAGLGMA MFSLGLFMAL QPRIIACGNS VASFAMAVRF LTGPAVMAAA SIAVGLRGTL LHVAIVQAAL PQGIVPFVFA KEYNVHPDIL STGVIFGMLI
601: ALPITLVYYI FMGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.