Factsheet for PGSC0003DMT400072459

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	97.79	97.95
PGSC0003DMT400021600	Potato	golgi, plasma membrane	86.54	85.52
VIT_08s0040g01230.t01	Wine grape	golgi, plasma membrane	81.77	80.4
VIT_08s0040g01220.t01	Wine grape	plasma membrane	80.75	79.13
KRH66749	Soybean	plasma membrane	79.73	78.39
GSMUA_Achr8P09440_001	Banana	plasma membrane	71.04	76.37
GSMUA_Achr2P00910_001	Banana	golgi, plasma membrane, vacuole	71.55	75.4
KRG95082	Soybean	plasma membrane	60.48	73.8
Os11t0137000-01	Rice	golgi, plasma membrane	68.31	72.38
Os12t0133800-01	Rice	peroxisome, plastid	36.63	70.03
TraesCS4B01G130100.1	Wheat	plasma membrane	67.29	69.79
TraesCS4D01G125300.1	Wheat	plasma membrane	67.12	69.61
TraesCS4A01G188100.1	Wheat	plasma membrane	67.12	69.37
PGSC0003DMT400014752	Potato	golgi, plasma membrane	69.34	66.29
EES09211	Sorghum	golgi, plasma membrane	65.76	66.21
Zm00001d052442_P001	Maize	plasma membrane	62.86	64.4
PGSC0003DMT400078330	Potato	golgi, plasma membrane	68.14	61.16
PGSC0003DMT400048251	Potato	plasma membrane	62.18	57.84
PGSC0003DMT400079013	Potato	plasma membrane	50.26	55.87
PGSC0003DMT400015267	Potato	cytosol	43.61	55.17
PGSC0003DMT400017300	Potato	plasma membrane	8.86	52.53
PGSC0003DMT400003569	Potato	plasma membrane	23.0	51.92
HORVU4Hr1G026680.4	Barley	plastid	66.44	49.94
PGSC0003DMT400046253	Potato	plasma membrane	27.6	45.63
PGSC0003DMT400017301	Potato	golgi, plasma membrane	13.12	43.5
HORVU3Hr1G111420.1	Barley	mitochondrion, plastid	28.79	39.3
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	21.12	38.63

Protein Annotations

EntrezGene:102588079	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1CQC1	InterPro:Mem_trans	PFAM:PF03547
EnsemblPlantsGene:PGSC0003DMG400028191	PGSC:PGSC0003DMG400028191	EnsemblPlants:PGSC0003DMT400072459	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI000295CE8A	RefSeq:XP_006339260.1	:	:	:

Description

Auxin efflux carrier [Source:PGSC_GENE;Acc:PGSC0003DMG400028191]

Coordinates

chr10:+:57054192..57057982

Molecular Weight (calculated)

63909.8 Da

IEP (calculated)

8.951

GRAVY (calculated)

0.233

Length

587 amino acids

Sequence
(BLAST)

001: MITVSDLYHV LTAVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA SNNPYAMNYR FIAADTLQKV IVLVVLAIWS RISSRGSLEW
101: SITLFSLSTL PNTLVMGIPL LKGMYGDASG SLMVQIVVLQ CIIWYTLMLF LFEYRGARML IAEQFPDTGG SIVSFKIDSD VISLDGKEPL ETQAEVGDDG
201: KLHVVVRKST SSRSEIFSRM SHGHNTGGLS MTPRPSNLSN TEIYSLQSSR NMTPRDSNFN HNDIYSMVNG KNNATMSPRT SNFGNLGFDE ESGFGKTNVG
301: YPAPTNAGIF SPVTGGPGTK KKANGTESGK DLHMFVWSSS ASPVSEGGIH VFRGGDFGNE LGIGHHSKDY DDFGREEFSL GDKNNSNGCH REEPVLKKLG
401: SSSTAELFPN TANETKATAM PAASVMTRLI LIMVWRKLIR NPNTYSSLLG LAWSLISFRW NIQMPLIFAK SISILSDAGL GMAMFSLGLF MALQPKMISC
501: GKTIAAFSMA VRFISGPAVM AAASFAIGLR GVLLHIAIVQ AALPQGIVPF VFAKEYSLHP DILSTGVIFG MLIALPITLV YYILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.