Factsheet for TraesCS4D01G125300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G130100.1	Wheat	plasma membrane	99.65	99.65
TraesCS4A01G188100.1	Wheat	plasma membrane	99.47	99.12
Os12t0133800-01	Rice	peroxisome, plastid	49.47	91.21
Os11t0137000-01	Rice	golgi, plasma membrane	87.63	89.53
EES09211	Sorghum	golgi, plasma membrane	85.34	82.85
Zm00001d052442_P001	Maize	plasma membrane	82.51	81.5
GSMUA_Achr8P09440_001	Banana	plasma membrane	70.67	73.26
GSMUA_Achr2P00910_001	Banana	golgi, plasma membrane, vacuole	70.49	71.63
HORVU4Hr1G026680.4	Barley	plastid	97.88	70.93
KRH66749	Soybean	plasma membrane	72.61	68.84
PGSC0003DMT400021600	Potato	golgi, plasma membrane	70.85	67.51
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	70.85	67.51
PGSC0003DMT400072459	Potato	golgi, plasma membrane	69.61	67.12
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	69.43	67.06
KRG95082	Soybean	plasma membrane	55.12	64.86
TraesCS6D01G287800.1	Wheat	plasma membrane	67.14	64.52
TraesCS7D01G191600.1	Wheat	plasma membrane	66.25	63.99
TraesCS3D01G221900.1	Wheat	plasma membrane	63.96	61.36
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	62.9	56.24
TraesCS3D01G247700.1	Wheat	plasma membrane	33.75	53.5
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	55.83	53.02
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	31.27	48.23
TraesCS3D01G421600.1	Wheat	plasma membrane	30.21	45.24
TraesCS7D01G259700.1	Wheat	plasma membrane, vacuole	29.33	43.68
VIT_04s0023g00330.t01	Wine grape	extracellular, golgi	6.36	42.86
TraesCS5D01G293300.1	Wheat	plasma membrane	28.45	42.71
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	27.92	41.91
TraesCS5D01G293100.1	Wheat	golgi, plasma membrane, vacuole	28.45	41.6
TraesCS3D01G324800.1	Wheat	plasma membrane	31.1	40.84
TraesCS7D01G446900.1	Wheat	plasma membrane	18.2	36.14

Protein Annotations

EnsemblPlants:TraesCS4D01G125300.1	EnsemblPlantsGene:TraesCS4D01G125300	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Auxin_eff_plant	InterPro:Mem_trans	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14
PFAM:PF03547	SEG:seg	TIGRFAMs:TIGR00946	TMHMM:TMhelix	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1

Description

No Description!

Coordinates

chr4D:+:109469594..109471968

Molecular Weight (calculated)

60601.0 Da

IEP (calculated)

8.849

GRAVY (calculated)

0.329

Length

566 amino acids

Sequence
(BLAST)

001: MITAADLYHV LTAVVPLYVA MTLAYGSVRW WRIFTPDQCS GINRFVALFA VPLLSFHFIS SNDPFAMNLR FLAADTLQKL AVLALLGLWC RLRNGSLDWL
101: ITLFSLSTLP NTLVMGIPLL RGMYGPASAG TLMVQIVVLQ CIIWYTLMLF LFEYRGAKML VMEQFPDTAA DIVSFRVDSD VVSLAAGGGA DLQAEAEVGE
201: DGRMRVTVRK STSSRSEAAC SHSHSHSHSQ SMQPRVSNLS GVEIYSLQSS RNPTPRGSSF NHAEFFNIVG GAKGDEEKGS AGAGNGTGGH SPQPLPQALA
301: GKRKDLHMFV WSSSASPVSE RAAGGAMHVF GGGADHGDVL AKGAQAYDEY GRGGGDDFSF RNKNGGVANV DGPTLAKLGS NSTAQLHPKD DGEERAAAMP
401: PASVMTRLIL IMVWRKLIRN PNTYSSLIGV VWSLVSYRWG IEMPAIIAKS ISILSDAGLG MAMFSLGLFM ALQPRIIACG NKLASYAMAV RFLVGPAVMA
501: AASLAVGLRG VLLHIAIVQA ALPQGIVPFV FAKEYNVHPN ILSTAVIFGM LIALPITLVY YILLGL

Best Arabidopsis Sequence Match ( AT1G23080.3 )
(BLAST)

001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNAGPM
401: NGDYGGEEES ERVKEVPNGL HKLRCNSTAE LNPKEAIETG ETVPVKHMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLI WALVAFRWDV AMPKIIQQSI
501: SILSDAGLGM AMFSLGLFMA LQPKLIACGN STATFAMAVR FFTGPAVMAV AAMAIGLRGD LLRVAIVQAA LPQGIVPFVF AKEYNVHPAI LSTGVIFGML
601: IALPITLVYY ILLGL

Arabidopsis Description

PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.