Factsheet for Solyc10g080880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072459	Potato	golgi, plasma membrane	97.95	97.79
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	86.18	85.02
VIT_08s0040g01230.t01	Wine grape	golgi, plasma membrane	81.74	80.23
VIT_08s0040g01220.t01	Wine grape	plasma membrane	80.72	78.96
KRH66749	Soybean	plasma membrane	80.03	78.56
GSMUA_Achr8P09440_001	Banana	plasma membrane	71.33	76.56
GSMUA_Achr2P00910_001	Banana	golgi, plasma membrane, vacuole	71.5	75.22
KRG95082	Soybean	plasma membrane	60.58	73.8
Os11t0137000-01	Rice	golgi, plasma membrane	68.09	72.02
Os12t0133800-01	Rice	peroxisome, plastid	36.52	69.71
TraesCS4B01G130100.1	Wheat	plasma membrane	67.24	69.61
TraesCS4D01G125300.1	Wheat	plasma membrane	67.06	69.43
TraesCS4A01G188100.1	Wheat	plasma membrane	67.06	69.19
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	69.8	66.94
EES09211	Sorghum	golgi, plasma membrane	65.7	66.04
Zm00001d052442_P001	Maize	plasma membrane	62.63	64.05
Solyc04g007690.2.1	Tomato	plasma membrane	65.53	62.64
Solyc05g008060.2.1	Tomato	nucleus	67.92	60.95
Solyc07g006900.1.1	Tomato	plasma membrane	62.29	57.84
Solyc06g059730.1.1	Tomato	plasma membrane	49.49	55.77
Solyc02g087660.2.1	Tomato	plasma membrane	32.59	53.5
HORVU4Hr1G026680.4	Barley	plastid	66.38	49.81
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	27.3	44.69
Solyc04g056620.1.1	Tomato	plasma membrane	24.74	41.79
HORVU3Hr1G111420.1	Barley	mitochondrion, plastid	28.5	38.84

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	UniProt:E5KGD2	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009926	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EMBL:HQ127076	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF14	EnsemblPlantsGene:Solyc10g080880.1	EnsemblPlants:Solyc10g080880.1.1	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0001F3EF90

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:E5KGD2]

Coordinates

chr10:-:62061161..62063920

Molecular Weight (calculated)

63861.8 Da

IEP (calculated)

9.123

GRAVY (calculated)

0.240

Length

586 amino acids

Sequence
(BLAST)

001: MITVSDLYHV LTAVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA SNNPYAMNYR FIAADTLQKV IVLVVLAIWS RISSRGSLEW
101: SITLFSLSTL PNTLVMGIPL LKGMYGDASG SLMVQIVVLQ CIIWYTLMLF LFEYRGARML IAEQFPDTGG SIVSFKIDSD VISLDGKEPL ETQAEVGDDG
201: KLHVVVRKSA SSRSEIFSRM SHGHNTGGLS MTPRPSNLSN AEIYSLQSST NMTPRDSNFN HNDIYSMVNG KNNANMSPRT SNFGNLGFDE ESGFGKTNVG
301: YPAPTNAGIF SPAIGPGTKK KANGTESGKD LHMFVWSSSA SPVSEGGIHV FRGGDFGNEL GIGHHSKDYD DFGREEFSLR DKNNSNGCHR EEPVLKKLGS
401: SSTAELFPRT ATETKATAMP AASVMTRLIL IMVWRKLIRN PNTYSSLLGL AWSLISFRWN IQMPLVFAKS ISILSDAGLG MAMFSLGLFM ALQPKMISCG
501: KSIAAFSMAV RFISGPAVMA AASFAIGLRG VLLHIAIVQA ALPQGIVPFV FAKEYNLHPD ILSTGVIFGM LIALPITLVY YILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.