Factsheet for Solyc04g056620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	85.88	92.83
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	51.3	49.72
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	44.38	42.66
TraesCS7A01G258800.1	Wheat	plasma membrane, vacuole	42.65	40.33
Os08t0529000-01	Rice	plasma membrane	42.07	39.46
TraesCS7D01G259700.1	Wheat	plasma membrane, vacuole	42.65	38.95
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	40.63	38.42
TraesCS5A01G284500.1	Wheat	extracellular, plasma membrane, vacuole	40.06	38.08
Zm00001d006082_P001	Maize	extracellular, plasma membrane, vacuole	40.06	38.08
TraesCS5B01G283500.1	Wheat	extracellular, plasma membrane, vacuole	40.35	38.04
KXG35972	Sorghum	extracellular, plasma membrane, vacuole	40.06	37.47
TraesCS5B01G283600.1	Wheat	plasma membrane	39.19	37.36
Solyc02g087660.2.1	Tomato	plasma membrane	38.33	37.25
HORVU5Hr1G076210.1	Barley	plasma membrane	38.04	35.77
TraesCS5D01G293300.1	Wheat	plasma membrane	38.33	35.28
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	38.33	35.28
TraesCS5B01G284900.1	Wheat	golgi, plasma membrane, vacuole	38.04	35.01
TraesCS5D01G293100.1	Wheat	golgi, plasma membrane, vacuole	38.9	34.88
TraesCS5B01G285000.1	Wheat	plasma membrane	38.62	34.63
TraesCS5A01G285700.1	Wheat	golgi, plasma membrane, vacuole	38.62	34.63
TraesCS5A01G286000.1	Wheat	plasma membrane	35.45	34.45
Zm00001d031594_P001	Maize	plasma membrane	40.63	32.27
OQU80833	Sorghum	extracellular	26.8	31.1
HORVU5Hr1G076120.2	Barley	golgi, plasma membrane, vacuole	21.33	27.41
Solyc06g059730.1.1	Tomato	plasma membrane	40.35	26.92
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	42.94	25.08
Solyc04g007690.2.1	Tomato	plasma membrane	44.09	24.96
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	41.79	24.74
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	43.52	24.71
Solyc07g006900.1.1	Tomato	plasma membrane	42.65	23.45
Solyc05g008060.2.1	Tomato	nucleus	43.8	23.28
HORVU5Hr1G076060.2	Barley	mitochondrion	18.73	17.86
Os09t0505400-00	Rice	mitochondrion, nucleus, peroxisome	19.31	16.18

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	ncoils:Coil	UniProt:E5KGD7	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009926
GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EMBL:HQ127081	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF2
EnsemblPlantsGene:Solyc04g056620.1	EnsemblPlants:Solyc04g056620.1.1	TMHMM:TMhelix	UniParc:UPI0001F3EF95	SEG:seg	:

Description

Auxin efflux facilitator SlPIN10 [Source:UniProtKB/TrEMBL;Acc:E5KGD7]

Coordinates

chr4:-:54597208..54600807

Molecular Weight (calculated)

38413.8 Da

IEP (calculated)

7.460

GRAVY (calculated)

0.698

Length

347 amino acids

Sequence
(BLAST)

001: MIEWLDIYKV IEAMMPLYLA LGLGYGSVKW WHKLSAEHCD AINRLNYFFV LPFFTFDFIS QVNPYKMNYL FICGDLIAKA IIGFFLTLWA NFYSKGNLSW
101: SITTFSFCSL TNALVMGIPV MNAVSPQVGV DLVIQSLAIQ FLIWSIIIQF MMEFKNAKDE IMACEGANQD LEGNNNASKN TTPSLGSVMT IVWTKLSKNP
201: NFYACFLGIM WSLVADRWHF GLPNIVKECI SIMSKAGSGI GMFTIGVFVA MQQKIMAGGT GVIIFGLFLR FFIGPATMTI GSFLVGLHGN VFRASILQAA
301: LPPGIASFVL AKEYGVHPEI VSAVVIIGIL VSLPIMIAYY AISELTH

Best Arabidopsis Sequence Match ( AT5G16530.1 )
(BLAST)

001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H

Arabidopsis Description

PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.