Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G285000.1 | Wheat | plasma membrane | 96.12 | 96.12 |
| TraesCS5A01G285700.1 | Wheat | golgi, plasma membrane, vacuole | 95.87 | 95.87 |
| TraesCS5D01G293000.1 | Wheat | golgi, plasma membrane, vacuole | 86.82 | 89.12 |
| TraesCS5D01G293300.1 | Wheat | plasma membrane | 72.87 | 74.8 |
| TraesCS5D01G291800.1 | Wheat | extracellular, plasma membrane, vacuole | 59.69 | 62.94 |
| TraesCS7D01G259700.1 | Wheat | plasma membrane, vacuole | 52.45 | 53.42 |
| PGSC0003DMT400017300 | Potato | plasma membrane | 13.18 | 51.52 |
| TraesCS3D01G421600.1 | Wheat | plasma membrane | 48.06 | 49.21 |
| PGSC0003DMT400046253 | Potato | plasma membrane | 43.15 | 47.04 |
| Solyc01g068410.2.1 | Tomato | extracellular, plasma membrane | 42.89 | 46.37 |
| PGSC0003DMT400017301 | Potato | golgi, plasma membrane | 20.16 | 44.07 |
| VIT_04s0023g00450.t01 | Wine grape | golgi, plasma membrane | 40.31 | 43.21 |
| Solyc04g056620.1.1 | Tomato | plasma membrane | 34.88 | 38.9 |
| TraesCS3D01G247700.1 | Wheat | plasma membrane | 33.85 | 36.69 |
| PGSC0003DMT400027309 | Potato | extracellular, plasma membrane, vacuole | 30.23 | 36.45 |
| TraesCS3D01G324800.1 | Wheat | plasma membrane | 33.59 | 30.16 |
| TraesCS4D01G125300.1 | Wheat | plasma membrane | 41.6 | 28.45 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 40.57 | 26.61 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 40.31 | 26.17 |
| TraesCS6D01G287800.1 | Wheat | plasma membrane | 39.53 | 25.98 |
| TraesCS7D01G446900.1 | Wheat | plasma membrane | 19.12 | 25.96 |
| TraesCS7D01G191600.1 | Wheat | plasma membrane | 39.28 | 25.94 |
| TraesCS7D01G478800.1 | Wheat | golgi, plasma membrane, vacuole | 40.83 | 24.96 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G293100.1 | EnsemblPlantsGene:TraesCS5D01G293100 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF15 | PFAM:PF03547 |
| SEG:seg | TMHMM:TMhelix | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | : | : |
Description
No Description!
Coordinates
chr5D:+:390417851..390421761
Molecular Weight (calculated)
41488.0 Da
IEP (calculated)
9.265
GRAVY (calculated)
0.543
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGWGDVYKV VSAMAPLYFA LGLGYTSVRW WKFFTRDQCD AVNRLVIYFA LPFFAFDFNA HAGTFAASYR VLAADAVAKL VVVLAVAGWV ASCRWRHLSR
101: ALKTPPARPA RPDGGRGHSY SWCITGYSLG TLNNGLLVGV PLLDAMYGKW ARDIVVQLSV VQAVVWLPLL LVAFEARQAW LEVTSAPAPD GAREEGEQAA
201: PGSDDVDRPA AAGDGRKTAA TGWAFWAPLL RTVGLKVVGN PNVYASLLGV LWSSVANRWH LEMPGIIDGS ISIMSRTGLG IGMFNMGLFI GLQDKLVVCG
301: PGLTSLGMAM RFVAAPAATM IGALLLGLRG DLVRVAILQA ALPQSIGTFI FAREYDLHAN ILSTVVIVGT LASLPILATY YVVLGLM
101: ALKTPPARPA RPDGGRGHSY SWCITGYSLG TLNNGLLVGV PLLDAMYGKW ARDIVVQLSV VQAVVWLPLL LVAFEARQAW LEVTSAPAPD GAREEGEQAA
201: PGSDDVDRPA AAGDGRKTAA TGWAFWAPLL RTVGLKVVGN PNVYASLLGV LWSSVANRWH LEMPGIIDGS ISIMSRTGLG IGMFNMGLFI GLQDKLVVCG
301: PGLTSLGMAM RFVAAPAATM IGALLLGLRG DLVRVAILQA ALPQSIGTFI FAREYDLHAN ILSTVVIVGT LASLPILATY YVVLGLM
001: MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSGGDDI
401: GGLDSGEGER EIEKATAGLN KMGSNSTAEL EAAGGDGGGN NGTHMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWAL VAYRWHVAMP KILQQSISIL
501: SDAGLGMAMF SLGLFMALQP KIIACGNSVA TFAMAVRFIT GPAIMAVAGI AIGLHGDLLR IAIVQAALPQ GIVPFVFAKE YNVHPTILST GVIFGMLIAL
601: PITLVYYILL GL
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSGGDDI
401: GGLDSGEGER EIEKATAGLN KMGSNSTAEL EAAGGDGGGN NGTHMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWAL VAYRWHVAMP KILQQSISIL
501: SDAGLGMAMF SLGLFMALQP KIIACGNSVA TFAMAVRFIT GPAIMAVAGI AIGLHGDLLR IAIVQAALPQ GIVPFVFAKE YNVHPTILST GVIFGMLIAL
601: PITLVYYILL GL
Arabidopsis Description
PIN4Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178VZS2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.