Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 97.99 | 97.82 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 95.64 | 95.16 |
| HORVU1Hr1G091030.2 | Barley | golgi, plasma membrane, vacuole | 90.77 | 89.13 |
| HORVU1Hr1G072970.9 | Barley | golgi, plasma membrane, vacuole | 83.89 | 85.47 |
| Zm00001d045219_P001 | Maize | plasma membrane | 68.12 | 69.88 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 68.79 | 69.37 |
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 68.29 | 67.83 |
| GSMUA_Achr8P29780_001 | Banana | golgi, plasma membrane, vacuole | 49.5 | 60.95 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 59.23 | 59.83 |
| CDX96288 | Canola | golgi, plasma membrane | 57.05 | 58.32 |
| CDY25767 | Canola | plasma membrane | 55.87 | 58.12 |
| CDY68262 | Canola | plasma membrane | 56.88 | 58.05 |
| CDY40380 | Canola | plasma membrane | 54.7 | 58.01 |
| CDY63826 | Canola | plasma membrane | 54.7 | 57.9 |
| CDX68327 | Canola | plasma membrane | 46.98 | 57.73 |
| CDY23471 | Canola | golgi, plasma membrane | 47.48 | 57.4 |
| CDY12491 | Canola | plasma membrane | 55.2 | 57.32 |
| TraesCS6D01G287800.1 | Wheat | plasma membrane | 55.37 | 56.03 |
| TraesCS7D01G191600.1 | Wheat | plasma membrane | 55.03 | 55.97 |
| TraesCS4D01G125300.1 | Wheat | plasma membrane | 53.02 | 55.83 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 56.38 | 55.72 |
| AT1G23080.1 | Thale cress | plasma membrane | 56.04 | 53.96 |
| KRH38202 | Soybean | plasma membrane | 57.38 | 53.94 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 55.37 | 53.83 |
| CDX91695 | Canola | plasma membrane | 51.17 | 53.42 |
| AT2G01420.2 | Thale cress | plasma membrane | 55.2 | 53.41 |
| AT1G70940.1 | Thale cress | plasma membrane | 57.05 | 53.12 |
| TraesCS3D01G247700.1 | Wheat | plasma membrane | 31.38 | 52.38 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 57.38 | 52.29 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 56.88 | 52.23 |
| Solyc05g008060.2.1 | Tomato | nucleus | 57.21 | 52.22 |
| KRH49577 | Soybean | plasma membrane | 48.66 | 52.16 |
| CDY41467 | Canola | plasma membrane | 50.67 | 51.71 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 50.34 | 51.37 |
| KRH50369 | Soybean | plasma membrane | 57.05 | 51.13 |
| KRG89296 | Soybean | plasma membrane | 57.05 | 51.05 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 46.48 | 50.73 |
| CDY09501 | Canola | plasma membrane | 46.64 | 49.29 |
| TraesCS7D01G478800.1 | Wheat | golgi, plasma membrane, vacuole | 52.01 | 48.97 |
| PGSC0003DMT400015267 | Potato | cytosol | 37.42 | 48.06 |
| Bra016173.1-P | Field mustard | plasma membrane | 50.5 | 47.63 |
| TraesCS5D01G291800.1 | Wheat | extracellular, plasma membrane, vacuole | 28.19 | 45.78 |
| TraesCS7D01G259700.1 | Wheat | plasma membrane, vacuole | 27.85 | 43.68 |
| TraesCS3D01G421600.1 | Wheat | plasma membrane | 27.68 | 43.65 |
| TraesCS5D01G293000.1 | Wheat | golgi, plasma membrane, vacuole | 26.01 | 41.11 |
| TraesCS5D01G293300.1 | Wheat | plasma membrane | 25.5 | 40.32 |
| TraesCS5D01G293100.1 | Wheat | golgi, plasma membrane, vacuole | 26.17 | 40.31 |
| TraesCS3D01G324800.1 | Wheat | plasma membrane | 29.03 | 40.14 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 53.19 | 39.77 |
| TraesCS7D01G446900.1 | Wheat | plasma membrane | 17.11 | 35.79 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G422900.1 | EnsemblPlantsGene:TraesCS1D01G422900 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Auxin_eff_plant | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF16 |
| PFAM:PF03547 | SEG:seg | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 |
Description
No Description!
Coordinates
chr1D:-:478154287..478156901
Molecular Weight (calculated)
63190.9 Da
IEP (calculated)
9.570
GRAVY (calculated)
0.323
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWHDLYTV LTAMVPLYVA MILAYGSVRW WGVITADQCA GINRFVAVFA VPLLSFKVIS GSNLYAMDLR FAAADTLQKL LVLASLAVWS RLPVPFAGLD
101: WSITVFSSAT MPNTLIMGIP LLVAMYGRHA GDLMVQIVVL QCIIWCTLLL FLFEFRAARL LISGRFPAAA VADVRVDPDV VSLDGSHAEA QAEVAPDGSM
201: RVVVRRSAAS VSRRSLHNDA AAGMSPPRGS NLTGMEIYSV SSSRNHTPRG SSSFTHGDFS ATTGGGGAAA PALPPPPPHG AVRASSFGAA DLFSLHSSRQ
301: HTPRPSASYD EHAPRGRSAA AVAPVEDPKD NVHMFDWSSG ASGASEVSGL PVFRSSAKES GRRRAPSDAT SINSDSSRSN RPGATGGERV KSGAAAQESL
401: ERLEAGTEAT GKEQEQDETK KDGGEVGKPP ASVMLRLILT MVWRRLIRNP NTYASVVGLV WSLIEFRYHV TMPAIVAKSI SILSDAGLGM AMFSLGLFMA
501: LQPKLIACGK SVAASTMAVR FLLGPAVMAV SSAAVGLRGT LLRIAVVQAA LPQGIVPFVF AKEYNLHAAI LCTGVIFGML IALPIVLLYY IILGLL
101: WSITVFSSAT MPNTLIMGIP LLVAMYGRHA GDLMVQIVVL QCIIWCTLLL FLFEFRAARL LISGRFPAAA VADVRVDPDV VSLDGSHAEA QAEVAPDGSM
201: RVVVRRSAAS VSRRSLHNDA AAGMSPPRGS NLTGMEIYSV SSSRNHTPRG SSSFTHGDFS ATTGGGGAAA PALPPPPPHG AVRASSFGAA DLFSLHSSRQ
301: HTPRPSASYD EHAPRGRSAA AVAPVEDPKD NVHMFDWSSG ASGASEVSGL PVFRSSAKES GRRRAPSDAT SINSDSSRSN RPGATGGERV KSGAAAQESL
401: ERLEAGTEAT GKEQEQDETK KDGGEVGKPP ASVMLRLILT MVWRRLIRNP NTYASVVGLV WSLIEFRYHV TMPAIVAKSI SILSDAGLGM AMFSLGLFMA
501: LQPKLIACGK SVAASTMAVR FLLGPAVMAV SSAAVGLRGT LLRIAVVQAA LPQGIVPFVF AKEYNLHAAI LCTGVIFGML IALPIVLLYY IILGLL
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNAGPM
401: NGDYGGEEES ERVKEVPNGL HKLRCNSTAE LNPKEAIETG ETVPVKHMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLI WALVAFRWDV AMPKIIQQSI
501: SILSDAGLGM AMFSLGLFMA LQPKLIACGN STATFAMAVR FFTGPAVMAV AAMAIGLRGD LLRVAIVQAA LPQGIVPFVF AKEYNVHPAI LSTGVIFGML
601: IALPITLVYY ILLGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNAGPM
401: NGDYGGEEES ERVKEVPNGL HKLRCNSTAE LNPKEAIETG ETVPVKHMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLI WALVAFRWDV AMPKIIQQSI
501: SILSDAGLGM AMFSLGLFMA LQPKLIACGN STATFAMAVR FFTGPAVMAV AAMAIGLRGD LLRVAIVQAA LPQGIVPFVF AKEYNVHPAI LSTGVIFGML
601: IALPITLVYY ILLGL
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.