Factsheet for Bra016173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96288	Canola	golgi, plasma membrane	83.86	90.91
CDY68262	Canola	plasma membrane	83.23	90.07
AT1G70940.1	Thale cress	plasma membrane	84.02	82.97
Bra003938.1-P	Field mustard	golgi, plasma membrane	69.46	80.4
Bra012358.1-P	Field mustard	golgi, plasma membrane	74.37	77.94
CDY09501	Canola	plasma membrane	66.77	74.82
Bra016366.1-P	Field mustard	golgi, plasma membrane	67.88	73.46
PGSC0003DMT400015267	Potato	cytosol	51.42	70.04
PGSC0003DMT400078330	Potato	golgi, plasma membrane	71.36	68.96
Solyc05g008060.2.1	Tomato	nucleus	71.04	68.76
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	70.57	68.72
KRH38202	Soybean	plasma membrane	68.04	67.82
KRG89296	Soybean	plasma membrane	71.2	67.57
Solyc04g007690.2.1	Tomato	plasma membrane	65.35	67.37
KRH50369	Soybean	plasma membrane	70.73	67.22
KRH49577	Soybean	plasma membrane	56.33	64.03
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	44.78	58.47
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	57.12	58.41
GSMUA_Achr7P17140_001	Banana	plasma membrane	53.48	58.08
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	55.54	57.83
TraesCS3D01G221900.1	Wheat	plasma membrane	53.48	57.29
TraesCS3A01G231500.1	Wheat	plasma membrane	53.48	56.81
Zm00001d044083_P001	Maize	plasma membrane	54.43	56.39
Bra015983.1-P	Field mustard	plasma membrane	54.91	56.15
Bra008105.1-P	Field mustard	golgi, plasma membrane	54.43	55.84
EES01159	Sorghum	golgi, plasma membrane	55.06	53.29
Bra026669.1-P	Field mustard	golgi, plasma membrane	66.61	52.82
Bra002763.1-P	Field mustard	plasma membrane	48.26	51.26
Bra006834.1-P	Field mustard	plasma membrane	52.06	51.25
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	47.47	50.76
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	47.63	50.5
Zm00001d045219_P001	Maize	plasma membrane	46.2	50.26
Bra035648.1-P	Field mustard	plasma membrane	52.53	50.23
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	47.31	50.08
EER89254	Sorghum	golgi, plasma membrane, vacuole	46.99	49.5
TraesCS1A01G415400.1	Wheat	golgi, plasma membrane, vacuole	46.68	49.25
TraesCS3B01G260700.1	Wheat	plasma membrane	46.99	48.77
Bra015694.1-P	Field mustard	plasma membrane	39.87	43.9
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	24.05	43.68
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	22.31	41.35
Bra023503.1-P	Field mustard	golgi, plasma membrane	20.73	21.94
HORVU7Hr1G038700.9	Barley	nucleus, plastid	23.1	21.01

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra016173	EnsemblPlants:Bra016173.1	EnsemblPlants:Bra016173.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4DI46
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF36	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI00025412D5	SEG:seg	:	:	:	:

Description

AT1G70940 (E=8e-274) PIN3, ATPIN3 | PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter

Coordinates

chrA07:+:19047198..19049882

Molecular Weight (calculated)

68500.1 Da

IEP (calculated)

9.776

GRAVY (calculated)

0.032

Length

632 amino acids

Sequence
(BLAST)

001: MARPLYGPHG RDSPLRRYDP RLRLCTVVEN LLPRPMLRNK PFRRYLRRPS PLFPLHLHHN PYAMNLRFIA ADTLQKILML ALLVLWANFT RSGSLEWSIT
101: IFSLSTLPNT LVMGIPLLIA MYGEYAGSLM VQVVVLQCII WYTLLLFLFE FRGAKMLIME QFPETAASIV SFKVESDVVS LDGHDFLETD AEIGNDGKLH
201: VTVRKSNASR RSFCGPNMTP RPSNLTGAEI YSLSTTPRGS NFNNSDFYSM MGFPGGRLSN FGPADMYSVQ SSRGPTPRPS NFEENSAIAS SPRFGYYPGG
301: GGGSYPAPNP EFSSATATST ANKAVSKNPT NPQTGVKANN HDASAKELHM FVWSSNGSPV SDRAGLNVSD GAPGSGSNNE QGAKEIRMLV PDQSQNGESK
401: ALARPASGDF GGERFSFAGR EEEGERAKDA ENGLNKHAPS SSAELQLKTG LGAAGGGEGS HVKHMPPASV MTRLILIMVW RKLIRNPNTY SSLIGLIWAL
501: VAFRWHVAMP KIIQQSISIL SDAGLGMAMF SLGLFMALQP KLIACGNSVA TFAMAVRFLT GPAVMAVASI AIGLHGDLLR VAIVQAALPQ GIVPFVFAKE
601: YNVHPAILST GVIFGMLIAL PITLVYYILL GL

Best Arabidopsis Sequence Match ( AT1G70940.1 )
(BLAST)

001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL

Arabidopsis Description

PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.