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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96288 Canola golgi, plasma membrane 99.14 99.31
CDY23471 Canola golgi, plasma membrane 78.42 92.9
CDX68327 Canola plasma membrane 75.86 91.34
AT1G70940.1 Thale cress plasma membrane 94.18 85.94
CDY25767 Canola plasma membrane 83.39 84.99
CDY12491 Canola plasma membrane 83.05 84.49
Bra016173.1-P Field mustard plasma membrane 90.07 83.23
CDY63826 Canola plasma membrane 78.6 81.53
CDY40380 Canola plasma membrane 77.57 80.61
CDX91695 Canola plasma membrane 78.42 80.21
CDY41467 Canola plasma membrane 78.77 78.77
CDY09501 Canola plasma membrane 73.8 76.42
VIT_01s0011g04860.t01 Wine grape golgi, plasma membrane 81.34 73.19
PGSC0003DMT400078330 Potato golgi, plasma membrane 81.51 72.78
Solyc04g007690.2.1 Tomato plasma membrane 76.37 72.76
Solyc05g008060.2.1 Tomato nucleus 81.34 72.74
KRH38202 Soybean plasma membrane 78.94 72.71
KRH50369 Soybean plasma membrane 80.65 70.83
KRG89296 Soybean plasma membrane 80.65 70.72
KRH49577 Soybean plasma membrane 66.1 69.42
GSMUA_Achr8P29780_001 Banana golgi, plasma membrane, vacuole 55.82 67.36
GSMUA_Achr7P17140_001 Banana plasma membrane 66.1 66.32
PGSC0003DMT400015267 Potato cytosol 52.57 66.16
CDX96484 Canola plasma membrane 60.45 65.98
CDX82059 Canola golgi, plasma membrane 59.25 65.78
GSMUA_Achr1P25190_001 Banana golgi, plasma membrane, vacuole 68.32 65.73
Os01t0643300-01 Rice golgi, plasma membrane, vacuole 68.66 64.89
TraesCS3D01G221900.1 Wheat plasma membrane 65.41 64.75
TraesCS3A01G231500.1 Wheat plasma membrane 65.41 64.2
CDY47745 Canola golgi, plasma membrane 63.01 64.11
Zm00001d044083_P001 Maize plasma membrane 66.1 63.28
EES01159 Sorghum golgi, plasma membrane 66.61 59.57
CDY11886 Canola plasma membrane 61.3 57.84
CDY38263 Canola plasma membrane 57.19 57.79
Zm00001d045219_P001 Maize plasma membrane 57.02 57.31
TraesCS1D01G422900.1 Wheat golgi, plasma membrane, vacuole 58.05 56.88
Os05t0576900-01 Rice golgi, plasma membrane, vacuole 57.36 56.68
CDY20694 Canola plasma membrane 61.47 56.54
CDY72296 Canola golgi, plasma membrane 43.84 56.51
TraesCS1B01G445400.1 Wheat golgi, plasma membrane, vacuole 57.71 56.45
EER89254 Sorghum golgi, plasma membrane, vacuole 57.88 56.33
TraesCS3B01G260700.1 Wheat plasma membrane 58.39 55.99
CDY53978 Canola plasma membrane 57.02 55.87
CDY69709 Canola plasma membrane 57.71 55.61
TraesCS1A01G415400.1 Wheat golgi, plasma membrane, vacuole 57.02 55.59
CDX88606 Canola plasma membrane 60.79 55.21
CDY63766 Canola golgi, plasma membrane 25.51 50.17
CDX70699 Canola golgi, plasma membrane, vacuole 29.79 50.0
CDX85565 Canola plasma membrane 30.99 50.0
CDX69445 Canola golgi, plasma membrane, vacuole 29.62 49.71
CDY67254 Canola golgi, plasma membrane, vacuole 29.62 49.71
CDX88341 Canola plasma membrane 48.12 49.56
CDX87543 Canola plasma membrane 47.95 49.38
CDX69551 Canola endoplasmic reticulum, extracellular, vacuole 18.84 49.11
CDX78697 Canola plasma membrane 29.97 44.42
CDY66594 Canola plasma membrane 32.02 41.65
HORVU7Hr1G038700.9 Barley nucleus, plastid 25.51 21.44
CDX85566 Canola cytosol 2.91 6.16
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1GO:A0A078JS96UniProt:A0A078JS96InterPro:Auxin_eff_plantEnsemblPlants:CDY68262
ProteinID:CDY68262ProteinID:CDY68262.1GO:GO:0005575GO:GO:0006810GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0009719GO:GO:0009734GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00072118001InterPro:Mem_transPFAM:PF03547PANTHER:PTHR31752PANTHER:PTHR31752:SF36
TIGRFAMs:TIGR00946TMHMM:TMhelixUniParc:UPI0004EE8175SEG:seg::
Description
BnaC06g43740DAuxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A078JS96]
Coordinates
chrLK037066:+:1537..4637
Molecular Weight (calculated)
63319.2 Da
IEP (calculated)
8.009
GRAVY (calculated)
0.295
Length
584 amino acids
Sequence
(BLAST)
001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI LMLALLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYAG SLMVQVVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNNSDF YSMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENSA MASSPRFGYY
301: PGGGGGGAKE LHMFVWSSNG SPVSDRAGLN VSDGAPEIRM LVPEQSQNGE SKALARPASG DFGGERFSFA GREEEGERAK DAENGLNKHA PSSSAELQSK
401: TGLGAAGGGE GSHVKHMPPA SVMTRLILIM VWRKLIRNPN TYSSLIGLIW ALVAFRWHVA MPKIIQQSIS ILSDAGLGMA MFSLGLFMAL QPKLIACGNS
501: VATFAMAVRF LTGPAVMAVA SIAIGLHGDL LRVAIVQAAL PQGIVPFVFA KEYNVHPAIL STGVIFGMLI ALPITLVYYI LLGL
Best Arabidopsis Sequence Match ( AT1G70940.1 )
(BLAST)
001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
Arabidopsis Description
PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.