CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40380	Canola	plasma membrane	96.45	96.62
AT2G01420.2	Thale cress	plasma membrane	92.54	84.58
CDY25767	Canola	plasma membrane	81.17	79.76
CDY12491	Canola	plasma membrane	80.82	79.27
CDX96288	Canola	golgi, plasma membrane	81.88	79.07
CDY68262	Canola	plasma membrane	81.53	78.6
CDY23471	Canola	golgi, plasma membrane	67.32	76.88
CDX68327	Canola	plasma membrane	65.72	76.29
CDX91695	Canola	plasma membrane	75.49	74.43
CDY41467	Canola	plasma membrane	75.84	73.12
Solyc04g007690.2.1	Tomato	plasma membrane	76.38	70.15
PGSC0003DMT400078330	Potato	golgi, plasma membrane	80.64	69.42
Solyc05g008060.2.1	Tomato	nucleus	80.46	69.37
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	79.93	69.34
KRH38202	Soybean	plasma membrane	77.09	68.45
Bra026669.1-P	Field mustard	golgi, plasma membrane	96.09	67.88
KRH50369	Soybean	plasma membrane	79.22	67.07
KRH49577	Soybean	plasma membrane	65.9	66.73
CDY09501	Canola	plasma membrane	66.79	66.67
KRG89296	Soybean	plasma membrane	78.86	66.67
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	56.48	65.7
CDX82059	Canola	golgi, plasma membrane	59.68	63.88
GSMUA_Achr7P17140_001	Banana	plasma membrane	65.9	63.75
CDX96484	Canola	plasma membrane	60.21	63.36
PGSC0003DMT400015267	Potato	cytosol	52.22	63.36
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	67.85	62.93
TraesCS3D01G221900.1	Wheat	plasma membrane	65.54	62.54
CDY47745	Canola	golgi, plasma membrane	63.23	62.02
TraesCS3A01G231500.1	Wheat	plasma membrane	65.36	61.85
Zm00001d044083_P001	Maize	plasma membrane	66.96	61.8
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	67.67	61.65
EES01159	Sorghum	golgi, plasma membrane	67.32	58.04
CDY38263	Canola	plasma membrane	59.33	57.79
CDY11886	Canola	plasma membrane	62.34	56.7
CDY20694	Canola	plasma membrane	62.88	55.75
CDY53978	Canola	plasma membrane	58.79	55.54
CDY69709	Canola	plasma membrane	59.5	55.28
Zm00001d045219_P001	Maize	plasma membrane	56.84	55.08
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	57.9	54.7
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	57.73	54.44
EER89254	Sorghum	golgi, plasma membrane, vacuole	57.9	54.33
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	57.02	54.31
TraesCS3B01G260700.1	Wheat	plasma membrane	58.44	54.02
CDX88606	Canola	plasma membrane	61.46	53.81
TraesCS1A01G415400.1	Wheat	golgi, plasma membrane, vacuole	56.84	53.42
CDY72296	Canola	golgi, plasma membrane	42.63	52.98
CDX69445	Canola	golgi, plasma membrane, vacuole	30.55	49.43
CDY67254	Canola	golgi, plasma membrane, vacuole	30.55	49.43
CDX70699	Canola	golgi, plasma membrane, vacuole	30.37	49.14
CDX85565	Canola	plasma membrane	31.26	48.62
CDY63766	Canola	golgi, plasma membrane	25.22	47.81
CDX87543	Canola	plasma membrane	48.13	47.8
CDX69551	Canola	endoplasmic reticulum, extracellular, vacuole	19.01	47.77
CDX88341	Canola	plasma membrane	47.96	47.62
CDX78697	Canola	plasma membrane	30.55	43.65
CDY66594	Canola	plasma membrane	32.33	40.53
HORVU7Hr1G038700.9	Barley	nucleus, plastid	24.87	20.14
CDX85566	Canola	cytosol	2.84	5.8

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	GO:A0A078JET9	UniProt:A0A078JET9	InterPro:Auxin_eff_plant	EnsemblPlants:CDY63826
ProteinID:CDY63826	ProteinID:CDY63826.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00039660001	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF36
TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0004EDD2B6	SEG:seg	:	:

Description

BnaC02g47640DAuxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A078JET9]

Coordinates

chrLK034356:-:374..3437

Molecular Weight (calculated)

61440.3 Da

IEP (calculated)

8.098

GRAVY (calculated)

0.332

Length

563 amino acids

Sequence
(BLAST)

001: MITWHDLYTV LTAVVPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLVLLGLWA SLTKKGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGVEAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLTMTP RPSNLTGAEI YSMSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADMYSVQ SSRGPTPRPS NFEENNAVKY GFYPNSSKGS
301: HDAKELHMFV WSSSASPEHV AAEQSEQGAK EIRMVVSDPP RKSDVRGGDD MDLGEVEREI EKATAGLNKV GSSSAAELEA AGGDTGGGGG KATHMPPASV
401: VTRLILIMVW RKLIRNPNTY SSLIGLIWAL VAYRRWHVAM PKILQQSISI LSDAGLGMAM FSLGLFMALQ PKIIACGNSV ATFAMAVRFL TGPAIMAVAS
501: LIIGLHGDLL RIAIVQAALP QGIVPFVFAK EYNVHPTILS TAVIFGMLIA LPITLVYYIF LGL

Best Arabidopsis Sequence Match ( AT2G01420.1 )
(BLAST)

001: MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSGGDDI
401: GGLDSGEGER EIEKATAGLN KMGSNSTAEL EAAGGDGGGN NGTHMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWAL VAYRWHVAMP KILQQSISIL
501: SDAGLGMAMF SLGLFMALQP KIIACGNSVA TFAMAVRFIT GPAIMAVAGI AIGLHGDLLR IAIVQAALPQ GIVPFVFAKE YNVHPTILST GVIFGMLIAL
601: PITLVYYILL GL

Arabidopsis Description

PIN4Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178VZS2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.