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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:cytosol
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY63826 Canola plasma membrane 96.62 96.45
AT2G01420.2 Thale cress plasma membrane 92.53 84.42
CDY25767 Canola plasma membrane 81.85 80.28
CDY12491 Canola plasma membrane 81.49 79.79
CDX96288 Canola golgi, plasma membrane 81.14 78.22
CDY68262 Canola plasma membrane 80.61 77.57
CDY23471 Canola golgi, plasma membrane 67.62 77.08
CDX68327 Canola plasma membrane 66.37 76.91
CDX91695 Canola plasma membrane 75.44 74.26
CDY41467 Canola plasma membrane 75.98 73.12
Solyc04g007690.2.1 Tomato plasma membrane 75.98 69.66
PGSC0003DMT400078330 Potato golgi, plasma membrane 80.96 69.57
Solyc05g008060.2.1 Tomato nucleus 80.78 69.53
VIT_01s0011g04860.t01 Wine grape golgi, plasma membrane 79.36 68.72
Bra026669.1-P Field mustard golgi, plasma membrane 97.15 68.51
KRH38202 Soybean plasma membrane 76.51 67.82
CDY09501 Canola plasma membrane 67.26 67.02
KRH50369 Soybean plasma membrane 79.0 66.77
KRG89296 Soybean plasma membrane 78.65 66.37
KRH49577 Soybean plasma membrane 65.48 66.19
GSMUA_Achr8P29780_001 Banana golgi, plasma membrane, vacuole 56.58 65.7
CDX82059 Canola golgi, plasma membrane 59.96 64.07
GSMUA_Achr7P17140_001 Banana plasma membrane 65.84 63.57
CDX96484 Canola plasma membrane 60.14 63.18
GSMUA_Achr1P25190_001 Banana golgi, plasma membrane, vacuole 67.79 62.77
PGSC0003DMT400015267 Potato cytosol 51.78 62.72
TraesCS3D01G221900.1 Wheat plasma membrane 65.48 62.37
CDY47745 Canola golgi, plasma membrane 63.35 62.02
TraesCS3A01G231500.1 Wheat plasma membrane 65.66 62.02
Zm00001d044083_P001 Maize plasma membrane 67.26 61.97
Os01t0643300-01 Rice golgi, plasma membrane, vacuole 67.79 61.65
EES01159 Sorghum golgi, plasma membrane 67.26 57.89
CDY38263 Canola plasma membrane 59.25 57.61
CDY11886 Canola plasma membrane 62.81 57.03
CDY20694 Canola plasma membrane 63.35 56.06
CDY69709 Canola plasma membrane 59.96 55.61
CDY53978 Canola plasma membrane 58.72 55.37
Zm00001d045219_P001 Maize plasma membrane 56.94 55.08
TraesCS1D01G422900.1 Wheat golgi, plasma membrane, vacuole 58.01 54.7
TraesCS1B01G445400.1 Wheat golgi, plasma membrane, vacuole 57.83 54.44
EER89254 Sorghum golgi, plasma membrane, vacuole 58.01 54.33
Os05t0576900-01 Rice golgi, plasma membrane, vacuole 57.12 54.31
TraesCS3B01G260700.1 Wheat plasma membrane 58.72 54.19
CDX88606 Canola plasma membrane 61.74 53.97
TraesCS1A01G415400.1 Wheat golgi, plasma membrane, vacuole 56.94 53.42
CDY72296 Canola golgi, plasma membrane 42.53 52.76
CDX69445 Canola golgi, plasma membrane, vacuole 30.78 49.71
CDY67254 Canola golgi, plasma membrane, vacuole 30.78 49.71
CDX70699 Canola golgi, plasma membrane, vacuole 30.25 48.85
CDX85565 Canola plasma membrane 31.14 48.34
CDX87543 Canola plasma membrane 48.75 48.32
CDX88341 Canola plasma membrane 48.58 48.15
CDY63766 Canola golgi, plasma membrane 25.09 47.47
CDX69551 Canola endoplasmic reticulum, extracellular, vacuole 18.86 47.32
CDX78697 Canola plasma membrane 30.43 43.4
CDY66594 Canola plasma membrane 32.21 40.31
HORVU7Hr1G038700.9 Barley nucleus, plastid 25.27 20.43
CDX85566 Canola cytosol 2.85 5.8
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1GO:A0A078HP97UniProt:A0A078HP97InterPro:Auxin_eff_plantEnsemblPlants:CDY40380
ProteinID:CDY40380ProteinID:CDY40380.1GO:GO:0005575GO:GO:0006810GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0009719GO:GO:0009734GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00069575001InterPro:Mem_transPFAM:PF03547PANTHER:PTHR31752PANTHER:PTHR31752:SF36
TIGRFAMs:TIGR00946TMHMM:TMhelixUniParc:UPI0004EE4563SEG:seg::
Description
BnaA02g26940DAuxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A078HP97]
Coordinates
chrLK032469:+:102540..105601
Molecular Weight (calculated)
61412.3 Da
IEP (calculated)
7.412
GRAVY (calculated)
0.311
Length
562 amino acids
Sequence
(BLAST)
001: MITWHDLYTV LTAVVPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKV IMLVLLGLWA SLTKKGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGVEAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSMSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADMYSVQ SSRGPTPRPS NFEENNAITK ENQELETKGS
301: HDAKELHMFV WSSSASPEHV AAEQSEQGAK EIRMVVSDPP RKSDVRGGDD MDAGEVQREI EKATAGLNKV GSNSTAELEA AGGDAGGGRG KGTHMPPASV
401: VTRLILIMVW RKLIRNPNTY SSLIGLIWAL VAYRWHVAMP KILQQSISIL SDAGLGMAMF SLGLFMALQP KIIACGNSVA TFAMAVRFLT GPAIMAVASL
501: IIGLHGDLLR IAIVQAALPQ GIVPFVFAKE YNVHPTILST AVIFGMLIAL PITLVYYIFL GL
Best Arabidopsis Sequence Match ( AT2G01420.1 )
(BLAST)
001: MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSGGDDI
401: GGLDSGEGER EIEKATAGLN KMGSNSTAEL EAAGGDGGGN NGTHMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWAL VAYRWHVAMP KILQQSISIL
501: SDAGLGMAMF SLGLFMALQP KIIACGNSVA TFAMAVRFIT GPAIMAVAGI AIGLHGDLLR IAIVQAALPQ GIVPFVFAKE YNVHPTILST GVIFGMLIAL
601: PITLVYYILL GL
Arabidopsis Description
PIN4Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178VZS2]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.