Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70699 | Canola | golgi, plasma membrane, vacuole | 86.55 | 97.99 |
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 79.7 | 90.23 |
| AT5G16530.1 | Thale cress | plasma membrane | 80.2 | 90.03 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 79.19 | 89.66 |
| VIT_04s0023g00320.t01 | Wine grape | plasma membrane | 64.72 | 71.63 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 58.12 | 70.46 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 56.09 | 68.85 |
| KRH00905 | Soybean | golgi, plasma membrane, vacuole | 60.15 | 64.23 |
| KRH40330 | Soybean | golgi, plasma membrane, vacuole | 59.64 | 62.33 |
| Os01t0919800-01 | Rice | plasma membrane | 56.85 | 61.71 |
| KXG33996 | Sorghum | plasma membrane | 56.35 | 59.04 |
| TraesCS3B01G462900.1 | Wheat | plasma membrane | 55.08 | 58.97 |
| Zm00001d042345_P001 | Maize | plasma membrane | 56.09 | 57.85 |
| TraesCS3A01G426700.1 | Wheat | plasma membrane | 54.82 | 57.29 |
| TraesCS3D01G421600.1 | Wheat | plasma membrane | 54.82 | 57.14 |
| HORVU3Hr1G094000.3 | Barley | plasma membrane | 54.82 | 56.4 |
| Os11t0122800-00 | Rice | plasma membrane | 29.7 | 39.53 |
| CDX85565 | Canola | plasma membrane | 33.25 | 36.19 |
| CDX69551 | Canola | endoplasmic reticulum, extracellular, vacuole | 20.3 | 35.71 |
| CDY63766 | Canola | golgi, plasma membrane | 26.65 | 35.35 |
| CDX82059 | Canola | golgi, plasma membrane | 44.42 | 33.27 |
| CDX96484 | Canola | plasma membrane | 44.42 | 32.71 |
| CDY66594 | Canola | plasma membrane | 35.03 | 30.73 |
| CDY63826 | Canola | plasma membrane | 43.65 | 30.55 |
| CDY40380 | Canola | plasma membrane | 43.4 | 30.43 |
| CDY47745 | Canola | golgi, plasma membrane | 44.16 | 30.31 |
| CDX96288 | Canola | golgi, plasma membrane | 44.42 | 30.02 |
| CDY68262 | Canola | plasma membrane | 44.42 | 29.97 |
| CDY25767 | Canola | plasma membrane | 42.89 | 29.49 |
| CDX88341 | Canola | plasma membrane | 42.13 | 29.28 |
| CDX87543 | Canola | plasma membrane | 42.13 | 29.28 |
| CDY12491 | Canola | plasma membrane | 42.39 | 29.09 |
| CDY38263 | Canola | plasma membrane | 42.64 | 29.07 |
| CDX91695 | Canola | plasma membrane | 41.62 | 28.72 |
| CDY41467 | Canola | plasma membrane | 41.62 | 28.08 |
| CDX68327 | Canola | plasma membrane | 34.52 | 28.04 |
| CDY53978 | Canola | plasma membrane | 42.13 | 27.85 |
| CDY11886 | Canola | plasma membrane | 43.4 | 27.63 |
| CDY23471 | Canola | golgi, plasma membrane | 34.52 | 27.59 |
| CDY20694 | Canola | plasma membrane | 43.4 | 26.93 |
| CDX88606 | Canola | plasma membrane | 42.89 | 26.28 |
| CDY09501 | Canola | plasma membrane | 37.31 | 26.06 |
| CDY69709 | Canola | plasma membrane | 39.34 | 25.58 |
| CDY72296 | Canola | golgi, plasma membrane | 23.35 | 20.31 |
| CDX85566 | Canola | cytosol | 2.54 | 3.62 |
Protein Annotations
| EnsemblPlants:CDX78697 | EnsemblPlantsGene:GSBRNA2T00130124001 | GO:A0A078CPM7 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF2 |
| PFAM:PF03547 | ProteinID:CDX78697 | ProteinID:CDX78697.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF3FD7 |
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | : | : | : | : |
Description
BnaA03g06090D
Coordinates
chrLK031815:+:1853917..1856173
Molecular Weight (calculated)
43715.8 Da
IEP (calculated)
6.500
GRAVY (calculated)
0.680
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MISGGDVYKV IEAMVPLYVA LISGYGSVKW WNIFTRDQCD AINQLVYYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKI IIIAVLAFWA KYSSKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQEAV DLVVQSSVFQ GIVWLTLLLF VLELRRAGFS SNNNVDDINI EGGRKETVVV REEKSFLEVM SVVWLKLATN
201: PNCYSCILGI AWAFISNRWH FEMPGIIEGS ILIMSKAGTG TAMFNMGIFM ALQDKLIVCG TSLTAIGMVL KFIAGPAAMA IGSIAVGLHG NVLRVAIIQV
301: IIHFLYFCSG LSDQTNLMLF HFFCHHLFHF SEDTKLNSFE FSDKLAALPQ SITSFIFAKE YGLHADVLST AVIFGMLVSL PVLVAYYAAL EFIH
101: SITSFSLCTL TNSLVVGVPL AKAMYGQEAV DLVVQSSVFQ GIVWLTLLLF VLELRRAGFS SNNNVDDINI EGGRKETVVV REEKSFLEVM SVVWLKLATN
201: PNCYSCILGI AWAFISNRWH FEMPGIIEGS ILIMSKAGTG TAMFNMGIFM ALQDKLIVCG TSLTAIGMVL KFIAGPAAMA IGSIAVGLHG NVLRVAIIQV
301: IIHFLYFCSG LSDQTNLMLF HFFCHHLFHF SEDTKLNSFE FSDKLAALPQ SITSFIFAKE YGLHADVLST AVIFGMLVSL PVLVAYYAAL EFIH
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
Arabidopsis Description
PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.