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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70737
CDX79704
CDX84294
CDX84994
CDX84995
CDX86408
CDX87453
CDX98906
CDY00109
CDY03849
CDY17273
CDY20012
CDY24397
CDY24398
CDY24399
CDY30918
CDY31621
CDY35849
CDY36104
CDY42101
CDY43662
CDY45159
CDY46744
CDY51132
CDY60440
CDY65012
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G57090.1 CDX70737 AT1G25490.1 17889649
AT5G57090.1 CDX84994 AT1G25490.1 17889649
AT5G57090.1 CDX84995 AT1G25490.1 17889649
AT5G57090.1 CDX87453 AT1G25490.1 17889649
AT5G57090.1 CDY03849 AT1G25490.1 17889649
AT5G57090.1 CDY24397 AT1G25490.1 17889649
AT5G57090.1 CDY24398 AT1G25490.1 17889649
AT5G57090.1 CDY24399 AT1G25490.1 17889649
AT5G57090.1 CDY31621 AT1G25490.1 17889649
AT5G57090.1 CDY35849 AT1G25490.1 17889649
AT5G57090.1 CDY36104 AT1G25490.1 17889649
AT5G57090.1 CDY42101 AT1G25490.1 17889649
AT5G57090.1 CDY51132 AT1G25490.1 17889649
AT5G57090.1 CDY70440 AT1G25490.1 17889649
AT5G57090.1 CDY30918 AT1G59980.1 18047472
AT5G57090.1 CDY45159 AT1G59980.1 18047472
AT5G57090.1 CDX84294 AT2G34650.1 17889649
AT5G57090.1 CDY17273 AT2G34650.1 17889649
AT5G57090.1 CDY43662 AT2G34650.1 17889649
AT5G57090.1 CDX79704 AT2G36910.1 17237354
AT5G57090.1 CDY46744 AT2G36910.1 17237354
AT5G57090.1 CDX86408 AT3G28860.1 17237354
AT5G57090.1 CDY00109 AT3G28860.1 17237354
AT5G57090.1 CDY20012 AT3G28860.1 17237354
AT5G57090.1 CDY65012 AT3G28860.1 17237354
AT5G57090.1 CDX98906 AT5G06140.1 16936718
AT5G57090.1 CDY60440 AT5G06140.1 16936718
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11886 Canola plasma membrane 93.16 96.77
Bra006834.1-P Field mustard plasma membrane 94.71 94.86
CDY20694 Canola plasma membrane 90.2 91.34
CDY69709 Canola plasma membrane 84.91 90.1
AT5G57090.1 Thale cress golgi, plasma membrane, vacuole 88.18 87.64
CDY38263 Canola plasma membrane 70.3 78.2
CDY53978 Canola plasma membrane 70.61 76.17
KRH02749 Soybean plasma membrane 74.81 75.51
KRH19119 Soybean endoplasmic reticulum 74.81 74.92
GSMUA_Achr1P15720_001 Banana plasma membrane 58.01 72.71
VIT_11s0052g00440.t01 Wine grape plasma membrane 70.92 72.38
Solyc07g006900.1.1 Tomato plasma membrane 69.05 70.36
PGSC0003DMT400048251 Potato plasma membrane 68.74 70.05
EER88769 Sorghum plasma membrane 64.7 66.45
CDX82059 Canola golgi, plasma membrane 54.28 66.35
Os06t0660200-01 Rice plasma membrane 64.54 65.87
TraesCS7A01G492400.1 Wheat golgi, plasma membrane, vacuole 64.7 65.82
TraesCS7B01G398100.1 Wheat golgi, plasma membrane, vacuole 64.7 65.82
TraesCS7D01G478800.1 Wheat golgi, plasma membrane, vacuole 64.7 65.72
HORVU7Hr1G110470.7 Barley golgi, plasma membrane, vacuole 64.7 65.62
CDX96484 Canola plasma membrane 54.28 65.23
Zm00001d046893_P001 Maize golgi, plasma membrane, vacuole 64.39 65.09
CDY47745 Canola golgi, plasma membrane 56.14 62.89
CDY23471 Canola golgi, plasma membrane 47.9 62.47
CDX68327 Canola plasma membrane 46.66 61.86
CDY25767 Canola plasma membrane 55.05 61.78
CDY40380 Canola plasma membrane 53.97 61.74
CDY12491 Canola plasma membrane 55.05 61.67
CDY63826 Canola plasma membrane 53.81 61.46
CDY68262 Canola plasma membrane 55.21 60.79
CDX96288 Canola golgi, plasma membrane 55.05 60.72
CDX91695 Canola plasma membrane 51.48 57.97
CDY41467 Canola plasma membrane 51.48 56.68
CDY72296 Canola golgi, plasma membrane 39.81 56.51
CDY09501 Canola plasma membrane 46.66 53.19
CDY67254 Canola golgi, plasma membrane, vacuole 26.59 49.14
CDX69445 Canola golgi, plasma membrane, vacuole 26.59 49.14
CDX88341 Canola plasma membrane 43.08 48.85
CDX87543 Canola plasma membrane 42.77 48.5
CDX70699 Canola golgi, plasma membrane, vacuole 26.13 48.28
CDY63766 Canola golgi, plasma membrane 21.46 46.46
CDX69551 Canola endoplasmic reticulum, extracellular, vacuole 16.17 46.43
CDX85565 Canola plasma membrane 25.97 46.13
CDX78697 Canola plasma membrane 26.28 42.89
CDY66594 Canola plasma membrane 27.84 39.87
CDX85566 Canola cytosol 2.49 5.8
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1GO:A0A078DH85InterPro:Auxin_eff_plantEnsemblPlants:CDX88606ProteinID:CDX88606
ProteinID:CDX88606.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009719GO:GO:0009734GO:GO:0009987GO:GO:0010315
GO:GO:0010329GO:GO:0016020GO:GO:0016021GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00148641001InterPro:Mem_trans
PFAM:PF03547InterPro:PIN2PANTHER:PTHR31752PANTHER:PTHR31752:SF4TIGRFAMs:TIGR00946TMHMM:TMhelix
UniParc:UPI0004EDEAF2SEG:seg::::
Description
BnaA03g10430D
Coordinates
chrLK031856:+:141512..145428
Molecular Weight (calculated)
69440.3 Da
IEP (calculated)
9.615
GRAVY (calculated)
0.120
Length
643 amino acids
Sequence
(BLAST)
001: MITGKDMYDV LAAMVPLYVA MMLAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMDYQ FLAADSLQKS SFIFMCEVLV SSFYILILNM
101: KLVNTHSHTA FSRRGSLEWM ITLFSLSTLP NTLVMGIPLL RAMYGDFSGN LMVQIVVLQS IIWYTLMLFL FEFRGAKLLI SEQFPETAGS ITSFRVDSDV
201: LSLNGREPLE TDAEIGDDGK LHVVVRRSSA ASSMISSFNK SHGGGLNSSM ITPRASNLTG VEIYSVQSSR EPTPRASSFN QTDFYAMFNA SKAPSPHVYS
301: LQSSKGVTPR TSNFDEEALK NAKKGGRGAK IPSYPPPNPM FKGSTSGASG VKKKESVGGG GGSGGGGEQN KEMNMFVWSS SASPVSEAHA RNAITRGAST
401: DSSTDPKAYL PPHENLASKA MHNLIENMTP GRKAHVEMDQ EGNNEGKSGV NSSPYNGKKG SDVEDGGPGG PRKQQMPPAS VMTRLILIMV WRKLIRNPNT
501: YSSLFGLAWS LISFKWNIKM PTIMSGSISI LSDAGLGMAM FSLGLFMALQ PKIIACGKSV AVFAMAVRFL TGPAVIAATS IAIGLRGSLL HVAIVQAALP
601: QGIVPFVFAK EYNVHPDILS TAVIFGMLVA LPVTVLYYVL LGI
Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)
001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
Arabidopsis Description
PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.