Factsheet for VIT_11s0052g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g05060.t01
VIT_10s0003g04320.t01
VIT_14s0108g00430.t01
VIT_16s0039g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	VIT_10s0003g04320.t01	AT2G34650.1	17889649
AT5G57090.1	VIT_08s0007g05060.t01	AT2G36910.1	17237354
AT5G57090.1	VIT_14s0108g00430.t01	AT3G28860.1	17237354
AT5G57090.1	VIT_16s0039g01230.t01	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02749	Soybean	plasma membrane	81.27	80.38
KRH19119	Soybean	endoplasmic reticulum	81.59	80.06
PGSC0003DMT400048251	Potato	plasma membrane	78.25	78.13
Solyc07g006900.1.1	Tomato	plasma membrane	77.3	77.18
GSMUA_Achr1P15720_001	Banana	plasma membrane	61.43	75.44
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	76.67	74.65
CDY11886	Canola	plasma membrane	72.06	73.34
CDY20694	Canola	plasma membrane	73.65	73.07
Bra006834.1-P	Field mustard	plasma membrane	74.44	73.05
CDY69709	Canola	plasma membrane	70.0	72.77
Bra035648.1-P	Field mustard	plasma membrane	76.03	72.47
CDX88606	Canola	plasma membrane	72.38	70.92
CDY38263	Canola	plasma membrane	64.13	69.9
CDY53978	Canola	plasma membrane	65.87	69.63
Bra002763.1-P	Field mustard	plasma membrane	65.71	69.58
Os06t0660200-01	Rice	plasma membrane	65.87	65.87
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	65.56	65.24
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	65.4	65.19
EER88769	Sorghum	plasma membrane	64.6	65.02
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	65.08	64.87
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	65.24	64.83
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	64.44	63.84
VIT_08s0040g01230.t01	Wine grape	golgi, plasma membrane	59.84	63.15
VIT_17s0000g02420.t01	Wine grape	plasma membrane	59.52	63.13
VIT_08s0040g01220.t01	Wine grape	plasma membrane	59.68	62.77
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	60.79	59.01
VIT_14s0108g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	32.06	56.58
VIT_05s0062g01120.t01	Wine grape	plasma membrane	39.05	53.13
VIT_18s0001g15420.t01	Wine grape	plasma membrane	45.71	52.36
VIT_04s0023g00320.t01	Wine grape	plasma membrane	28.1	49.72
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	25.08	43.77
VIT_04s0023g00330.t01	Wine grape	extracellular, golgi	5.71	42.86

Protein Annotations

EntrezGene:100256460	wikigene:100256460	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	ProteinID:CCB44675
ProteinID:CCB44675.1	UniProt:F6GXI9	EMBL:FN594964	GO:GO:0000323	GO:GO:0001666	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723
GO:GO:0009733	GO:GO:0009734	GO:GO:0009749	GO:GO:0009921	GO:GO:0009925	GO:GO:0009926
GO:GO:0009958	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100256460	wikigene:LOC100256460	InterPro:Mem_trans	PFAM:PF03547
InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI00015CC0AF
ArrayExpress:VIT_11s0052g00440	EnsemblPlantsGene:VIT_11s0052g00440	EnsemblPlants:VIT_11s0052g00440.t01	RefSeq:XP_002266059	RefSeq:XP_002266059.1	SEG:seg

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:F6GXI9]

Coordinates

chr11:+:17806335..17808766

Molecular Weight (calculated)

68370.6 Da

IEP (calculated)

9.852

GRAVY (calculated)

0.220

Length

630 amino acids

Sequence
(BLAST)

001: MIRGKDIYDV LAAIVPLYVA MILAYGSVRW WKIFTPEQCA GINRFVAVFA VPLLSFHFIS LNDIYNMNYK FIAADSLQKI VILSALFLWQ AFAKNGSLEW
101: MITLFSLSTL PNTLVMGIPL LKAMYGDFSA SLMVQIVVLQ SVIWYTLMLF MFEYRGAKLL ITEQFPETAG SITSFRVESD VMSLNGREPL ETDAEIGDDG
201: KLHVVVRRSS SSSVISSAYK KSHGLNSISI TPRASNLTGV EIYSIQSSRE PTPRASSFNQ TDFYAMFASK TASPRHGSIG GVGAGGGADV FSLQSSKGPT
301: PRTSNFEEEM LKVGKKRGGR SMSGELFHGG LLSSYPPPNP MFSGSTSGGP KKKESGGGGA MPNKELHMFV WSSSASPVSE GNLRHTVNRA ESADFGVIDS
401: SKAVLQQEIA ASRGMLDFND TISPRVNGDR EADMEDGSIR TQAAGTPYSG QKKADMQAKK QQMPPTSVMT RLIMIMVWRK LIRNPNTYAS LIGLIWSLVS
501: FRWNIKMPTI VSGSISILSD AGLGMAMFSL GLFMALQPKM IACGKTVATF SMAVRFLTGP AVIAATSIAI GMRGVLLHVA IVQAALPQGI VPFVFAKEYN
601: VHADILSTAV IFGMLIALPI TIIYYVLLGL

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.