Factsheet for VIT_16s0039g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g07430.t01
VIT_06s0004g07760.t01
VIT_14s0083g00770.t01
VIT_16s0039g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	VIT_06s0004g07760.t01	AT2G30330.1	20971704
AT5G06140.1	VIT_16s0039g01230.t01	AT5G06140.1	21156856
AT5G06140.1	VIT_06s0004g07430.t01	AT5G07120.1	21156856
AT5G06140.1	VIT_14s0083g00770.t01	AT5G49550.1	20971704
AT5G06140.1	VIT_06s0004g07430.t01	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02960.t01	Wine grape	plastid	76.54	30.92
CDX98906	Canola	cytosol	65.43	27.18
CDY60440	Canola	cytosol	64.81	26.92
Bra009166.1-P	Field mustard	cytosol	64.2	26.67
AT5G06140.1	Thale cress	cytosol	66.05	26.62
GSMUA_Achr10P...	Banana	cytosol, plastid	61.73	24.69
TraesCS3B01G407400.2	Wheat	cytosol, plastid	56.17	22.75
TraesCS3D01G367700.1	Wheat	cytosol, plastid	56.17	22.75
Os01t0862300-01	Rice	plasma membrane	55.56	22.56
EES03929	Sorghum	plastid	55.56	22.5
HORVU3Hr1G083780.10	Barley	cytosol	56.17	22.09
TraesCS3A01G375200.3	Wheat	cytosol, plastid	56.17	21.51
Zm00001d012286_P001	Maize	cytosol	53.09	20.62
Zm00001d042761_P001	Maize	mitochondrion	52.47	18.16
VIT_13s0067g01990.t01	Wine grape	cytosol	29.63	8.57
VIT_06s0004g07430.t01	Wine grape	cytosol	29.01	8.45

Protein Annotations

Gene3D:3.30.1520.10	MapMan:35.1	ProteinID:CCB50563	ProteinID:CCB50563.1	UniProt:F6HEB7	EMBL:FN595750
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005771	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006896
GO:GO:0006897	GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009958	GO:GO:0009987	GO:GO:0010252	GO:GO:0016020	GO:GO:0016043
GO:GO:0016050	GO:GO:0019898	GO:GO:0030904	GO:GO:0035091	GO:GO:0043231	GO:GO:0048364
InterPro:IPR001683	InterPro:IPR036871	PFAM:PF00787	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170
InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF64268	UniParc:UPI0001984EE4	ArrayExpress:VIT_16s0039g01230
EnsemblPlantsGene:VIT_16s0039g01230	EnsemblPlants:VIT_16s0039g01230.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:+:683448..684216

Molecular Weight (calculated)

18817.7 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.370

Length

162 amino acids

Sequence
(BLAST)

001: MISTQQSGSG SSQSPRSPST QPFLSVSITD PIKLGNNVQA YIFYHVITKT NLPEYQGQEK IVIRCYNDFV CLRDRLFEKY KGIFVSPRSS KKECWREVHF
101: SAEFIKMRRQ ALDIFVNKIA SHHELQQSED LRTLLQVDEE TMEKARPLEE IMNILTFIAI LK

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.