Factsheet for Zm00001d042761_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010604_P008
Zm00001d012286_P001
Zm00001d015657_P001
Zm00001d036838_P001
Zm00001d038007_P001
Zm00001d038449_P001
Zm00001d042761_P001
Zm00001d043022_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	Zm00001d036838_P001	AT2G30330.1	20971704
AT5G06140.1	Zm00001d012286_P001	AT5G06140.1	21156856
AT5G06140.1	Zm00001d042761_P001	AT5G06140.1	21156856
AT5G06140.1	Zm00001d010604_P008	AT5G07120.1	21156856
AT5G06140.1	Zm00001d038007_P001	AT5G07120.1	21156856
AT5G06140.1	Zm00001d038449_P001	AT5G07120.1	21156856
AT5G06140.1	Zm00001d043022_P001	AT5G07120.1	21156856
AT5G06140.1	Zm00001d015657_P001	AT5G49550.1	20971704
AT5G06140.1	Zm00001d010604_P008	AT5G58440.1	21156856
AT5G06140.1	Zm00001d038007_P001	AT5G58440.1	21156856
AT5G06140.1	Zm00001d038449_P001	AT5G58440.1	21156856
AT5G06140.1	Zm00001d043022_P001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03929	Sorghum	plastid	76.71	89.75
TraesCS3D01G367700.1	Wheat	cytosol, plastid	73.5	86.0
TraesCS3B01G407400.2	Wheat	cytosol, plastid	73.29	85.75
Zm00001d012286_P001	Maize	cytosol	75.21	84.41
HORVU3Hr1G083780.10	Barley	cytosol	74.15	84.22
Os01t0862300-01	Rice	plasma membrane	70.94	83.21
TraesCS3A01G375200.3	Wheat	cytosol, plastid	73.72	81.56
GSMUA_Achr10P...	Banana	cytosol, plastid	62.82	72.59
PGSC0003DMT400022861	Potato	cytosol	55.98	71.39
VIT_08s0007g02960.t01	Wine grape	plastid	61.11	71.32
Bra009166.1-P	Field mustard	cytosol	57.91	69.49
CDY60440	Canola	cytosol	57.91	69.49
CDX98906	Canola	cytosol	57.91	69.49
KRH32778	Soybean	plastid	60.47	69.36
Solyc09g010130.2.1	Tomato	plastid	43.59	69.15
AT5G06140.1	Thale cress	cytosol	57.48	66.92
KRH72265	Soybean	plastid	60.47	62.06
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	18.16	52.47
CDY00386	Canola	nucleus	32.27	25.12
Zm00001d038007_P001	Maize	extracellular	22.44	18.99
Zm00001d010604_P008	Maize	cytosol, plastid	20.3	18.63
Zm00001d043022_P001	Maize	cytosol	19.87	18.2
Zm00001d038449_P001	Maize	cytosol	19.66	12.2

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:103650974	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	UniProt:A0A1D6N6K4	InterPro:AH/BAR_dom_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001683
InterPro:IPR027267	InterPro:IPR036871	ProteinID:ONM36229.1	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195
PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657
SUPFAM:SSF64268	UniParc:UPI000843BB1C	InterPro:Vps5_C	EnsemblPlantsGene:Zm00001d042761	EnsemblPlants:Zm00001d042761_P001	EnsemblPlants:Zm00001d042761_T001
SEG:seg	:	:	:	:	:

Description

Sorting nexin 1

Coordinates

chr3:+:179083938..179088600

Molecular Weight (calculated)

53280.5 Da

IEP (calculated)

8.888

GRAVY (calculated)

-0.622

Length

468 amino acids

Sequence
(BLAST)

001: MPSGGRRRRG TGLGFAWRTE DRMSGRRNGC GGSGEPDPAE KRSSSSSSKA VEADCSPAAA ERAKEPRKRS ELTEFLCRMR SMVELARAVA CASERSSSQS
101: QRSAAAGAPF LSISVTDPVK MGTGVQSYIS YRVITKTNLP EFEGPEKIVI RRYSDFEWLH DRLAERYKGI FIPPLPEKNA VEKFRFSKEF IELRRQALDL
201: FVNRIASHPE LKQSDVLRTF LQADEEIMDR ARSYETGIFK KPADFIQMFK DVQSKVSDVV LGKEKPVEES TPEYEKLKNY IFELENHLAE AQKQAYRLVK
301: RHRELGQSLA DFGKAIKHLG ACEGDLMEKV FSEVGSKSEM LSIKLQREAD NLLFNFEEPL KDYVRAVQSI KATMLDRANA FRQHFDLDQE RKYKELNLYL
401: KADSEEATKK FEHIVRLMNE ELARFQEQKT ADIGLAFHEF AKGQAKLAKD IADAWRSVLP KLEACSTS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.