Factsheet for PGSC0003DMT400022861

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022861
PGSC0003DMT400067769
PGSC0003DMT400068296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	PGSC0003DMT400067769	AT2G30330.1	20971704
AT5G06140.1	PGSC0003DMT400022861	AT5G06140.1	21156856
AT5G06140.1	PGSC0003DMT400068296	AT5G49550.1	20971704

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010130.2.1	Tomato	plastid	79.02	98.31
VIT_08s0007g02960.t01	Wine grape	plastid	84.47	77.31
KRH32778	Soybean	plastid	83.11	74.75
Bra009166.1-P	Field mustard	cytosol	79.02	74.36
AT5G06140.1	Thale cress	cytosol	78.2	71.39
GSMUA_Achr10P...	Banana	cytosol, plastid	76.84	69.63
EES03929	Sorghum	plastid	73.02	67.0
KRH72265	Soybean	plastid	82.83	66.67
TraesCS3D01G367700.1	Wheat	cytosol, plastid	71.66	65.75
TraesCS3B01G407400.2	Wheat	cytosol, plastid	71.66	65.75
Os01t0862300-01	Rice	plasma membrane	70.3	64.66
Zm00001d012286_P001	Maize	cytosol	72.75	64.03
HORVU3Hr1G083780.10	Barley	cytosol	71.39	63.59
TraesCS3A01G375200.3	Wheat	cytosol, plastid	71.93	62.41
Zm00001d042761_P001	Maize	mitochondrion	71.39	55.98
CDY00386	Canola	nucleus	38.15	23.29
PGSC0003DMT400061516	Potato	cytosol	25.07	17.01

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
UniProt:M1AHC3	PFAM:PF00787	PFAM:PF09325	EnsemblPlantsGene:PGSC0003DMG400008862	PGSC:PGSC0003DMG400008862	EnsemblPlants:PGSC0003DMT400022861
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI00029686AD	InterPro:Vps5_C	:	:

Description

Sorting nexin 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400008862]

Coordinates

chr9:+:2438315..2447127

Molecular Weight (calculated)

42634.1 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.563

Length

367 amino acids

Sequence
(BLAST)

001: MGNGVQAYIS YKVITKTNLP EYQGNEKIVI RRYSDFVWLH DRLFEKYKGI FIPPLPEKST VEKFRFSAEF IEMRRQALDV FVNRIASHHE LRQSDDLRIF
101: LQADEQTMDR ARFQETGIFK KKPADLIQIF KDVQSKVSDV VLGKEKPVEE STPEYEKIKN YIFELEDHLA EAQKHAYRLV KRHRELGESL SEFGKAVKLL
201: GTCDDDALGK AFSELGAKAE IISIKLQKEA HHLLMNFEEP LKDYVRAVQS IKATIAERAT AFKKQCELAE TIKFKEIDLN KYRLTRSEKL AEAEREYEML
301: KAEGEETSRR FDTIVRLMNE EIVRFQEQKT SDMGLAFHEF AKGQARLSNG IADAWRSLLP KLEAHSS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.