Factsheet for Bra009166.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002651.1-P
Bra005925.1-P
Bra009166.1-P
Bra009291.1-P
Bra010029.1-P
Bra022792.1-P
Bra036135.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	Bra022792.1-P	AT2G30330.1	20971704
AT5G06140.1	Bra009166.1-P	AT5G06140.1	21156856
AT5G06140.1	Bra005925.1-P	AT5G07120.1	21156856
AT5G06140.1	Bra009291.1-P	AT5G07120.1	21156856
AT5G06140.1	Bra010029.1-P	AT5G49550.1	20971704
AT5G06140.1	Bra036135.1-P	AT5G49550.1	20971704
AT5G06140.1	Bra002651.1-P	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60440	Canola	cytosol	99.74	99.74
AT5G06140.1	Thale cress	cytosol	92.82	90.05
PGSC0003DMT400022861	Potato	cytosol	74.36	79.02
KRH32778	Soybean	plastid	82.05	78.43
Solyc09g010130.2.1	Tomato	plastid	58.72	77.63
GSMUA_Achr10P...	Banana	cytosol, plastid	76.92	74.07
EES03929	Sorghum	plastid	72.31	70.5
KRH72265	Soybean	plastid	82.31	70.39
Os01t0862300-01	Rice	plasma membrane	70.77	69.17
TraesCS3B01G407400.2	Wheat	cytosol, plastid	70.77	69.0
TraesCS3D01G367700.1	Wheat	cytosol, plastid	70.77	69.0
HORVU3Hr1G083780.10	Barley	cytosol	70.51	66.75
Zm00001d012286_P001	Maize	cytosol	71.03	66.43
TraesCS3A01G375200.3	Wheat	cytosol, plastid	71.03	65.48
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	26.67	64.2
Zm00001d042761_P001	Maize	mitochondrion	69.49	57.91
Bra005925.1-P	Field mustard	cytosol	26.41	20.04
Bra009291.1-P	Field mustard	cytosol	25.38	18.44
Bra002651.1-P	Field mustard	cytosol	24.36	17.09

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	EnsemblPlantsGene:Bra009166	EnsemblPlants:Bra009166.1
EnsemblPlants:Bra009166.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005771	GO:GO:0005829	GO:GO:0006623
GO:GO:0006810	GO:GO:0006896	GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009958	GO:GO:0010252	GO:GO:0016020	GO:GO:0030904
GO:GO:0035091	GO:GO:0043231	GO:GO:0048364	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
UniProt:M4CY69	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170
InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI0002544E26
InterPro:Vps5_C	:	:	:	:	:

Description

AT5G06140 (E=2e-206) SNX1, ATSNX1 | SNX1 (SORTING NEXIN 1); phosphoinositide binding / protein binding

Coordinates

chrA10:-:15498845..15501518

Molecular Weight (calculated)

44958.9 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.544

Length

390 amino acids

Sequence
(BLAST)

001: MQSPRSPSSQ PYLSASVTDP VKLGNGVQAY ISYRVITKTN LPEYQGPEKI VIRRYSDFVW LRDRLLDKYK GVFVPPLPEK SAVEKFRFSA EFIEMRRAAL
101: DIFVNRIASH PELQQSEDLR TFLQADEETM ERFRFQETGI FNKKPADFMQ MFRDVQSKVS DAVLGKEKPV EETTPEYEKL KHYIFELENH LAEAQKHAYR
201: LVKRHRELGQ SLLDFGKAVK LLGACEGEPT GKLFSDLGTK SELVSIKLQK EAQQVLMNFE EPLKDYVRYV QSIKATIAER ATAFKQHCEL AETTKLKEIN
301: LDKLMLTRSD KVGEAEIEYR EMKAESEEAT IRFERIVKRM NEEIVRFQEQ KTEEMGVAFH QFAKGQARLA NGIADAWRAL LPKLEAASSA

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.