Factsheet for Solyc09g010130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g065690.2.1
Solyc09g010130.2.1
Solyc09g031590.2.1
Solyc11g068450.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	Solyc11g068450.1.1	AT2G30330.1	20971704
AT5G06140.1	Solyc09g010130.2.1	AT5G06140.1	21156856
AT5G06140.1	Solyc09g031590.2.1	AT5G07120.1	21156856
AT5G06140.1	Solyc02g065690.2.1	AT5G49550.1	20971704
AT5G06140.1	Solyc09g031590.2.1	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022861	Potato	cytosol	98.31	79.02
VIT_08s0007g02960.t01	Wine grape	plastid	83.73	61.6
KRH32778	Soybean	plastid	82.03	59.31
Bra009166.1-P	Field mustard	cytosol	77.63	58.72
AT5G06140.1	Thale cress	cytosol	75.25	55.22
GSMUA_Achr10P...	Banana	cytosol, plastid	74.58	54.32
EES03929	Sorghum	plastid	71.86	53.0
KRH72265	Soybean	plastid	81.69	52.85
TraesCS3B01G407400.2	Wheat	cytosol, plastid	69.49	51.25
TraesCS3D01G367700.1	Wheat	cytosol, plastid	69.49	51.25
Zm00001d012286_P001	Maize	cytosol	71.19	50.36
Os01t0862300-01	Rice	plasma membrane	67.8	50.13
HORVU3Hr1G083780.10	Barley	cytosol	69.15	49.51
TraesCS3A01G375200.3	Wheat	cytosol, plastid	69.83	48.7
Zm00001d042761_P001	Maize	mitochondrion	69.15	43.59
CDY00386	Canola	nucleus	45.42	22.3
Solyc09g031590.2.1	Tomato	cytosol	1.36	11.76
Solyc06g050550.2.1	Tomato	plastid	20.68	11.28
Solyc09g031600.2.1	Tomato	cytosol	17.29	10.78

Protein Annotations

EnsemblPlants:Solyc09g010130.2.1	EnsemblPlantsGene:Solyc09g010130.2	Gene3D:1.20.1270.60	Gene3D:3.30.1520.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	GO:GO:0035091	InterPro:AH/BAR_dom_sf	InterPro:IPR027267	InterPro:IPR036871	InterPro:PX_dom_sf
InterPro:Vps5_C	ncoils:Coil	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	PFAM:PF09325	SUPFAM:SSF103657
SUPFAM:SSF64268	UniParc:UPI000276CAEC	UniProt:K4CR42	MapMan:22.5.5.3.5	:	:

Description

No Description!

Coordinates

chr9:-:3503323..3510006

Molecular Weight (calculated)

34080.8 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.621

Length

295 amino acids

Sequence
(BLAST)

001: MRRQALDVFV NRIASHHELR QSDDLRIFLQ ADEQTMDRAR FQETGIFKKK PADLIQIFKD VQSKVSDVVL GKEKPVEEST PEYEKMKNYI FELEEHLAEA
101: QKHAYRLVKR HRELGESLSD FGKAVKLLGT CDDDALGKAF SELGAKSEII SIKLQKEAHH LLMNFEEPLK DYVRAVQSIK ATIAERATAF KKQCELAETI
201: KFKEIDLNKY KLTRSEKLAE AEREYEMLKA EGEETSRRFD TIVRLMNEEI VRFQEQKTSD MGLAFHEFAK GQARLSNGIA DAWRSLLPKL EAHSS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.