CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03929
EES06426
EES07883
EES18029
OQU78173
OQU87773

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	EES07883	AT2G30330.1	20971704
AT5G06140.1	EES03929	AT5G06140.1	21156856
AT5G06140.1	EES18029	AT5G07120.1	21156856
AT5G06140.1	OQU78173	AT5G07120.1	21156856
AT5G06140.1	OQU87773	AT5G07120.1	21156856
AT5G06140.1	EES06426	AT5G49550.1	20971704
AT5G06140.1	EES18029	AT5G58440.1	21156856
AT5G06140.1	OQU78173	AT5G58440.1	21156856
AT5G06140.1	OQU87773	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G367700.1	Wheat	cytosol, plastid	91.5	91.5
TraesCS3B01G407400.2	Wheat	cytosol, plastid	90.75	90.75
Zm00001d012286_P001	Maize	cytosol	93.75	89.93
Os01t0862300-01	Rice	plasma membrane	89.0	89.22
HORVU3Hr1G083780.10	Barley	cytosol	91.5	88.83
TraesCS3A01G375200.3	Wheat	cytosol, plastid	91.25	86.29
Zm00001d042761_P001	Maize	mitochondrion	89.75	76.71
VIT_08s0007g02960.t01	Wine grape	plastid	74.5	74.31
GSMUA_Achr10P...	Banana	cytosol, plastid	74.0	73.09
PGSC0003DMT400022861	Potato	cytosol	67.0	73.02
Bra009166.1-P	Field mustard	cytosol	70.5	72.31
CDY60440	Canola	cytosol	70.5	72.31
CDX98906	Canola	cytosol	70.5	72.31
Solyc09g010130.2.1	Tomato	plastid	53.0	71.86
KRH32778	Soybean	plastid	72.5	71.08
AT5G06140.1	Thale cress	cytosol	69.75	69.4
KRH72265	Soybean	plastid	72.5	63.6
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	22.5	55.56
CDY00386	Canola	nucleus	37.75	25.12
EES18029	Sorghum	cytosol	25.0	18.18
OQU87773	Sorghum	cytosol	23.0	17.9
OQU78173	Sorghum	cytosol	19.5	17.18

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	EntrezGene:8062363	InterPro:AH/BAR_dom_sf	UniProt:C5XQK2
ncoils:Coil	EnsemblPlants:EES03929	ProteinID:EES03929	ProteinID:EES03929.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005771
GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006896	GO:GO:0006897	GO:GO:0007275
GO:GO:0008150	GO:GO:0008289	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009958
GO:GO:0009987	GO:GO:0010252	GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898
GO:GO:0030904	GO:GO:0035091	GO:GO:0043231	GO:GO:0048364	InterPro:IPR001683	InterPro:IPR027267
InterPro:IPR036871	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170
InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	EnsemblPlantsGene:SORBI_3003G365300	SUPFAM:SSF103657	SUPFAM:SSF64268
unigene:Sbi.3859	UniParc:UPI0001A8526D	InterPro:Vps5_C	RefSeq:XP_002458809.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:68191997..68196083

Molecular Weight (calculated)

46125.1 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.558

Length

400 amino acids

Sequence
(BLAST)

001: MISPERSSSQ SPRSPAAAAG APFLSISVTD PVKMGTGVQA YISYRVITRT NLPEFEGPEK IVIRRYSDFE WLHDRLAERY KGVFIPPLPE KNAVEKFRFS
101: KEFIELRRQA LDLFVNRIAS HPELKQSDVL RTFLQADEEI MDRARSYETG IFKKPADFLQ MFKDVQSKVS DVVLGKEKPV EESSPEYEKL KNYIFELENH
201: LAEAQKQAYR LVKRHRELGQ SLADFGKAIK LLGACEGDLM EKVFSEVGSK SEMLSIKLQR EADNLLFNFE EPLKDYVRAV QSIKATMLDR ANAFRQHFDL
301: DQERKYKELN LEKLKFMNPE KYAEAESEFR ELKADSEEAT KKFEHIVRLM NEELARFQEQ KTADIGLAFH EFAKGQAKLA KDIADAWRSI LPKLEACSTS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.