Factsheet for HORVU3Hr1G083780.10

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060480.2
HORVU3Hr1G083780.10
HORVU5Hr1G046970.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	HORVU5Hr1G046970.2	AT2G30330.1	20971704
AT5G06140.1	HORVU3Hr1G083780.10	AT5G06140.1	21156856
AT5G06140.1	HORVU1Hr1G060480.2	AT5G07120.1	21156856
AT5G06140.1	HORVU1Hr1G060480.2	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G367700.1	Wheat	cytosol, plastid	96.36	99.25
TraesCS3B01G407400.2	Wheat	cytosol, plastid	96.12	99.0
TraesCS3A01G375200.3	Wheat	cytosol, plastid	95.87	93.38
EES03929	Sorghum	plastid	88.83	91.5
Os01t0862300-01	Rice	plasma membrane	86.65	89.47
Zm00001d012286_P001	Maize	cytosol	85.19	84.17
Zm00001d042761_P001	Maize	mitochondrion	84.22	74.15
GSMUA_Achr10P...	Banana	cytosol, plastid	72.33	73.58
VIT_08s0007g02960.t01	Wine grape	plastid	71.36	73.32
PGSC0003DMT400022861	Potato	cytosol	63.59	71.39
CDY60440	Canola	cytosol	66.75	70.51
CDX98906	Canola	cytosol	66.75	70.51
Bra009166.1-P	Field mustard	cytosol	66.75	70.51
KRH32778	Soybean	plastid	68.93	69.61
Solyc09g010130.2.1	Tomato	plastid	49.51	69.15
AT5G06140.1	Thale cress	cytosol	66.99	68.66
KRH72265	Soybean	plastid	68.93	62.28
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	22.09	56.17
CDY00386	Canola	nucleus	36.89	25.29
HORVU1Hr1G060480.2	Barley	plastid	24.27	17.04

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	UniProt:A0A287M055	InterPro:AH/BAR_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005771	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006896
GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628
GO:GO:0009958	GO:GO:0010252	GO:GO:0016020	GO:GO:0030904	GO:GO:0035091	GO:GO:0043231
GO:GO:0048364	EnsemblPlantsGene:HORVU3Hr1G083780	EnsemblPlants:HORVU3Hr1G083780.10	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf
InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI000B47C8BC	InterPro:Vps5_C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:605212796..605218321

Molecular Weight (calculated)

47177.2 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.593

Length

412 amino acids

Sequence
(BLAST)

001: QRGDEASQGK LAMISAERSQ SQSPRSPGAA AGAPFLSICV TDPVKMGTGV QSYISYRVIT KTNLPEFEGA EKIVIRRYSD FEWLHDRLAE KYKGIFIPPL
101: PEKNAVEKFR FSKEFIELRR QALDLFINRL ASHPELKQSE DLRTFLQADE EKMDRARSYE TGIFKKPGDF IQMFKDVQSK VSDVVLGKEK PVEESSPEYE
201: KLKHYIFELE NHLAEAQKQA FRLVKRHREL GQSLADFGKA IKLLGACEGD SLEKVFSEVG SKSEMLSIKL QREADNLLFN FEEPLKDYVR AVQSIKATML
301: DRANAFRQHF DLDQERKYKE LNLEKMKFMN PEKFSESETE FSELKAASEE ATKRYEHIVS VMNDELARFQ EQKTADIGLA FHEFAKGQAK LAKDIADAWR
401: SVLPKLEACS AS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.