Factsheet for HORVU1Hr1G060480.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060480.2
HORVU3Hr1G083780.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	HORVU3Hr1G083780.10	AT5G06140.1	21156856
AT5G07120.1	HORVU1Hr1G060480.2	AT5G07120.1	21156856
AT5G07120.1	HORVU1Hr1G060480.2	AT5G58440.1	21156856
AT5G58440.1	HORVU3Hr1G083780.10	AT5G06140.1	21156856
AT5G58440.1	HORVU1Hr1G060480.2	AT5G07120.1	21156856
AT5G58440.1	HORVU1Hr1G060480.2	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G235000.1	Wheat	cytosol, plastid	82.11	90.94
TraesCS1D01G223500.1	Wheat	cytosol, plastid	81.6	90.38
TraesCS1A01G221800.1	Wheat	cytosol, plastid	78.02	86.42
Os05t0346100-01	Rice	plasma membrane	73.42	79.81
Zm00001d038007_P001	Maize	extracellular	71.04	75.41
EES18029	Sorghum	cytosol	69.34	74.0
GSMUA_Achr8P21250_001	Banana	cytosol	58.09	62.34
GSMUA_Achr10P...	Banana	cytosol	51.45	59.45
GSMUA_Achr3P10000_001	Banana	mitochondrion	54.68	59.33
KRH73242	Soybean	cytosol	50.26	56.3
KRH14903	Soybean	cytosol	49.74	56.15
VIT_13s0067g01990.t01	Wine grape	cytosol	53.49	56.07
VIT_06s0004g07430.t01	Wine grape	cytosol	52.64	55.58
Solyc06g050550.2.1	Tomato	plastid	51.11	55.45
CDX81034	Canola	cytosol	46.85	55.33
CDX70009	Canola	cytosol	50.43	55.33
PGSC0003DMT400061516	Potato	cytosol	50.77	55.08
Bra009291.1-P	Field mustard	cytosol	50.09	54.75
CDX99005	Canola	cytosol	50.09	54.55
KRH72755	Soybean	cytosol, endoplasmic reticulum	51.79	54.48
CDY58875	Canola	cytosol	47.19	53.89
CDY57386	Canola	cytosol	51.28	53.85
Bra005925.1-P	Field mustard	cytosol	47.02	53.7
KRH17110	Soybean	cytosol	51.28	53.65
Bra002651.1-P	Field mustard	cytosol	50.43	53.24
AT5G07120.1	Thale cress	cytosol	50.43	51.75
Solyc09g031600.2.1	Tomato	cytosol	41.06	50.95
AT5G58440.1	Thale cress	cytosol	50.43	50.43
Solyc09g031590.2.1	Tomato	cytosol	2.9	50.0
CDY32985	Canola	cytosol	43.95	49.9
HORVU3Hr1G083780.10	Barley	cytosol	17.04	24.27

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	UniProt:A0A287FUM0	InterPro:AH/BAR_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:HORVU1Hr1G060480	EnsemblPlants:HORVU1Hr1G060480.2
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195
PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF64268
UniParc:UPI000B4862BC	InterPro:Vps5_C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:439169653..439175123

Molecular Weight (calculated)

64722.3 Da

IEP (calculated)

9.286

GRAVY (calculated)

-0.555

Length

587 amino acids

Sequence
(BLAST)

001: HPPRRGHVSV SSRVPTQPRG NPTATNRRNL RPRRTPIPTP STLRHPRARP AVTLAMMSSS PPAGAADGDG DMETLPLAAA SDYASVASTF DPLLSTSSPP
101: SPPTPAAFPL SRASSSFVDP PSYADVAASS PRSASASSSA SPRSARAATS EYSYIAVSDP ETEAEAAATS LVPGSGPTYI SYLVTSARRG DHRRHSVRRR
201: FRDFVTLADR LAESFRGNFV PPRPDKNTVE SQVMQRDEFV AQRRAALERY LWRLAEHPAI GASDELRVFL QAEGKMPLPS STDVASRMLD GAARLPRQLL
301: GEEAVAPPQD VVQPAKGGRD LLRIFKELKQ SMVTDWGGVR PPLVEEDKEF LQKKQKMQDW EQQLSSASQQ AEALVKAQQD MGETMGALGL AFVKLTKFET
401: EEAMYESQRI RAVDSKRIAT AAVKASRTCR DLNTQTVKYL DTLHEHLGIM LSVHTAFSDR ASALLTVQTL MSDLASLQSK IEKLEAASSK VFGGDRTRLR
501: KVHELRETIR ATEDAKCCAL REYERIKENN KIELSRLDRE RREDFLEMLK GYVTSQASYA EKIVDGWETV AEETSGYARR SSDDVTY

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.