CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14903	Soybean	cytosol	90.27	90.96
Solyc06g050550.2.1	Tomato	plastid	66.98	64.88
PGSC0003DMT400061516	Potato	cytosol	66.98	64.88
VIT_13s0067g01990.t01	Wine grape	cytosol	68.13	63.75
GSMUA_Achr8P21250_001	Banana	cytosol	62.79	60.15
GSMUA_Achr10P...	Banana	cytosol	57.82	59.65
KRH72755	Soybean	cytosol, endoplasmic reticulum	61.07	57.35
Os05t0346100-01	Rice	plasma membrane	58.97	57.22
KRH17110	Soybean	cytosol	61.26	57.22
TraesCS1D01G223500.1	Wheat	cytosol, plastid	56.68	56.04
GSMUA_Achr3P10000_001	Banana	mitochondrion	57.82	56.01
TraesCS1B01G235000.1	Wheat	cytosol, plastid	56.49	55.85
EES18029	Sorghum	cytosol	58.02	55.27
Zm00001d038007_P001	Maize	extracellular	58.21	55.15
TraesCS1A01G221800.1	Wheat	cytosol, plastid	54.77	54.15
GSMUA_Achr11P...	Banana	nucleus	52.48	52.28
HORVU1Hr1G060480.2	Barley	plastid	56.3	50.26
Os01t0827200-01	Rice	cytosol, extracellular	40.08	41.67
Zm00001d043022_P001	Maize	cytosol	40.46	41.49
OQU87773	Sorghum	cytosol	40.27	41.05
TraesCS3A01G347900.1	Wheat	cytosol	38.93	39.92
TraesCS3B01G379800.1	Wheat	cytosol	38.55	39.53
TraesCS3D01G341500.1	Wheat	cytosol	38.55	39.53
TraesCS1D01G293200.1	Wheat	cytosol	38.36	39.03
TraesCS1B01G307500.1	Wheat	cytosol	38.17	38.68
Zm00001d010604_P008	Maize	cytosol, plastid	37.6	38.63
TraesCS1A01G298000.1	Wheat	cytosol	37.6	38.18
OQU78173	Sorghum	cytosol	32.44	37.44
Zm00001d038449_P001	Maize	cytosol	37.02	25.73
KRH32778	Soybean	plastid	19.66	25.25
KRH72265	Soybean	plastid	19.66	22.59

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100784509	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	EMBL:ACUP02001272	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_02G261500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898
GO:GO:0035091	UniProt:I1JID1	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	EnsemblPlants:KRH73242
ProteinID:KRH73242	ProteinID:KRH73242.1	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555
PANTHER:PTHR10555:SF155	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268
UniParc:UPI0002337B48	InterPro:Vps5_C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:44747676..44753250

Molecular Weight (calculated)

59207.8 Da

IEP (calculated)

5.843

GRAVY (calculated)

-0.519

Length

524 amino acids

Sequence
(BLAST)

001: MMNHDSDDQQ HHILHASQDD EIMDSLILHH DDDGSSVHHH HRPTSPQSPN SPFNSFLDPP SYADAIFTSF DSNGHDQAVE SPAARFGSGD YLHISVTDPQ
101: KEQDLATSTS LVPGAATFYT YLITTLINLP EYGGVGSEFA VRRRFRDVVA LSERLALAYR GFFIPVRPDK STVESQVMQK QEFVEQRRVA LEKYLRKLAA
201: HPVIGRSEEL RLFLEAKERL PLAKTTDVAS RMLDGAVRLP RQLFSGEAEL GEVAQPAKGG RDLLRIFKEL KQSVANDWVG SKPLVVEEDK EFMERKDKLV
301: DFEHHLSNVS QQAESLVKFQ QDMGETMGEL GLAFVKLTKF ETEEAIFESQ RVRAADMRNV ATASVKASRL YRELNTQTIK HLDKLHEYLG TMLAVNNAFS
401: DRSSALLTVQ TLSSELASLH SRVEKLEVAS SKIFGGDKSR MRKIEELREA IRVTQDAKIC ADREYERIKE NNRSELERID QERNSDFLSM LRGFVANQAG
501: YAEKTATVWE KLAEETAAYL RDSS

Best Arabidopsis Sequence Match ( AT5G07120.1 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.