CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH17110
KRH32778
KRH72265
KRH72755

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	KRH32778	AT5G06140.1	21156856
AT5G07120.1	KRH72265	AT5G06140.1	21156856
AT5G07120.1	KRH17110	AT5G07120.1	21156856
AT5G07120.1	KRH72755	AT5G07120.1	21156856
AT5G07120.1	KRH17110	AT5G58440.1	21156856
AT5G07120.1	KRH72755	AT5G58440.1	21156856
AT5G58440.1	KRH32778	AT5G06140.1	21156856
AT5G58440.1	KRH72265	AT5G06140.1	21156856
AT5G58440.1	KRH17110	AT5G07120.1	21156856
AT5G58440.1	KRH72755	AT5G07120.1	21156856
AT5G58440.1	KRH17110	AT5G58440.1	21156856
AT5G58440.1	KRH72755	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17110	Soybean	cytosol	85.66	85.2
CDX81034	Canola	cytosol	62.01	69.62
VIT_06s0004g07430.t01	Wine grape	cytosol	67.56	67.81
CDX70009	Canola	cytosol	63.8	66.54
CDX99005	Canola	cytosol	64.16	66.42
CDY58875	Canola	cytosol	61.11	66.34
Bra005925.1-P	Field mustard	cytosol	60.93	66.15
CDY57386	Canola	cytosol	65.59	65.47
Bra002651.1-P	Field mustard	cytosol	65.23	65.47
Bra009291.1-P	Field mustard	cytosol	62.72	65.18
KRH14903	Soybean	cytosol	58.96	63.27
AT5G07120.1	Thale cress	cytosol	63.62	62.06
GSMUA_Achr8P21250_001	Banana	cytosol	60.39	61.61
CDY32985	Canola	cytosol	56.99	61.51
GSMUA_Achr10P...	Banana	cytosol	55.91	61.42
KRH73242	Soybean	cytosol	57.35	61.07
AT5G58440.1	Thale cress	cytosol	63.62	60.48
Solyc09g031590.2.1	Tomato	cytosol	3.58	58.82
TraesCS1B01G235000.1	Wheat	cytosol, plastid	55.02	57.92
Os05t0346100-01	Rice	plasma membrane	55.73	57.59
GSMUA_Achr3P10000_001	Banana	mitochondrion	55.73	57.49
TraesCS1D01G223500.1	Wheat	cytosol, plastid	54.3	57.17
Zm00001d038007_P001	Maize	extracellular	55.91	56.42
TraesCS1A01G221800.1	Wheat	cytosol, plastid	53.23	56.04
EES18029	Sorghum	cytosol	55.2	56.0
GSMUA_Achr11P...	Banana	nucleus	51.79	54.94
HORVU1Hr1G060480.2	Barley	plastid	54.48	51.79
Os01t0827200-01	Rice	cytosol, extracellular	38.71	42.86
Zm00001d010604_P008	Maize	cytosol, plastid	38.53	42.16
TraesCS1B01G307500.1	Wheat	cytosol	38.35	41.39
OQU87773	Sorghum	cytosol	37.81	41.05
TraesCS3B01G379800.1	Wheat	cytosol	37.28	40.7
TraesCS1A01G298000.1	Wheat	cytosol	37.46	40.5
TraesCS1D01G293200.1	Wheat	cytosol	37.28	40.39
TraesCS3A01G347900.1	Wheat	cytosol	36.92	40.31
OQU78173	Sorghum	cytosol	32.8	40.31
Zm00001d043022_P001	Maize	cytosol	36.74	40.12
TraesCS3D01G341500.1	Wheat	cytosol	36.74	40.12
Zm00001d038449_P001	Maize	cytosol	37.28	27.59
KRH32778	Soybean	plastid	19.71	26.96
KRH72265	Soybean	plastid	19.71	24.12

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100805370	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	EMBL:ACUP02001237	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_02G231800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898
GO:GO:0035091	UniProt:I1JHH9	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	EnsemblPlants:KRH72755
ProteinID:KRH72755	ProteinID:KRH72755.1	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555
PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268
UniParc:UPI0002337951	InterPro:Vps5_C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:41894790..41901742

Molecular Weight (calculated)

61951.9 Da

IEP (calculated)

5.053

GRAVY (calculated)

-0.529

Length

558 amino acids

Sequence
(BLAST)

001: MMEDHPLSAP KDEMENLVLH DGADDNGNGN DGAGAKSPFS SNYRSAMSTL SESHHHPLSP PILATPADSD PLLSPNPGSP DSSSYIDPPS YADAVFTPFD
101: DDTNDVESSP SSPISLSRSP SSSSEYLKIT VSNPVKEQET SNSIVPGSNS YVTYLVTTKT NIPEFGASGA DFAVRRRFRD VVTLSDRLAE AYRGFFIPPR
201: PDKSVVESQV MQKQEFVEQR RMALEKYLRR LATHPVIRKS DEFRVFLQVQ GRLPLPATTD VASRVLDGAS KLPKQLMGES VIAPHEVVQP ARGGMDLMRL
301: FKELRQSVAN DWGGSRPSVV EEDKEFMEKK EKINELEQQI NGASQQAESL VKAQQDMGET MGELGLAFIK LTKFENEEAI MNSQRVRAAD MKGVATAAVK
401: ASRLFRELNA QTVKHLDTLH EYLGLMLAVH SAFSDRSSAL LTVQTLLSEL SSLESRAEKL EVASSKIFGA DKSRVRKLEE LQETIRATED AKNVAIREYE
501: RIKENNRSEL ERLDKERQAD FLNMLKGFVV NQVGYAEKIA NVWTKVVEDT RGYVDEST

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.