Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G379800.1 | Wheat | cytosol | 98.04 | 98.04 |
| TraesCS3A01G347900.1 | Wheat | cytosol | 97.46 | 97.46 |
| Zm00001d043022_P001 | Maize | cytosol | 61.45 | 61.45 |
| Os01t0827200-01 | Rice | cytosol, extracellular | 60.47 | 61.31 |
| OQU87773 | Sorghum | cytosol | 60.27 | 59.92 |
| TraesCS1D01G293200.1 | Wheat | cytosol | 56.75 | 56.31 |
| Solyc09g031590.2.1 | Tomato | cytosol | 2.74 | 41.18 |
| GSMUA_Achr11P... | Banana | nucleus | 42.07 | 40.87 |
| TraesCS1D01G223500.1 | Wheat | cytosol, plastid | 42.07 | 40.57 |
| Solyc06g050550.2.1 | Tomato | plastid | 41.88 | 39.56 |
| PGSC0003DMT400061516 | Potato | cytosol | 41.68 | 39.37 |
| KRH14903 | Soybean | cytosol | 39.92 | 39.23 |
| CDX81034 | Canola | cytosol | 37.57 | 38.63 |
| KRH73242 | Soybean | cytosol | 39.53 | 38.55 |
| Bra005925.1-P | Field mustard | cytosol | 38.55 | 38.33 |
| Bra009291.1-P | Field mustard | cytosol | 40.12 | 38.17 |
| CDY58875 | Canola | cytosol | 38.36 | 38.13 |
| CDX70009 | Canola | cytosol | 39.73 | 37.94 |
| CDX99005 | Canola | cytosol | 39.92 | 37.85 |
| KRH17110 | Soybean | cytosol | 41.49 | 37.79 |
| CDY57386 | Canola | cytosol | 40.51 | 37.03 |
| CDY32985 | Canola | cytosol | 37.38 | 36.94 |
| VIT_06s0004g07430.t01 | Wine grape | cytosol | 40.12 | 36.87 |
| KRH72755 | Soybean | cytosol, endoplasmic reticulum | 40.12 | 36.74 |
| Bra002651.1-P | Field mustard | cytosol | 39.92 | 36.69 |
| VIT_13s0067g01990.t01 | Wine grape | cytosol | 40.12 | 36.61 |
| AT5G07120.1 | Thale cress | cytosol | 40.12 | 35.84 |
| Solyc09g031600.2.1 | Tomato | cytosol | 33.07 | 35.73 |
| AT5G58440.1 | Thale cress | cytosol | 40.9 | 35.6 |
| TraesCS3D01G367700.1 | Wheat | cytosol, plastid | 18.0 | 23.0 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | InterPro:AH/BAR_dom_sf | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036871 |
| PFAM:PF00787 | PFAM:PF09325 | PFscan:PS50195 | PANTHER:PTHR10555 | PANTHER:PTHR10555:SF146 | InterPro:PX_dom_sf |
| InterPro:Phox | SMART:SM00312 | SUPFAM:SSF64268 | EnsemblPlantsGene:TraesCS3D01G341500 | EnsemblPlants:TraesCS3D01G341500.1 | InterPro:Vps5_C |
| TIGR:cd07596 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:454696839..454701263
Molecular Weight (calculated)
56220.9 Da
IEP (calculated)
6.913
GRAVY (calculated)
-0.524
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAESPATA NHPADQHLET LALDSPSAAS AAASTDPLLH PPPSPSPPSA RAAAANGDPF VEENGEDESP PILPTPDSPV VSREPSPLSY QITVTDPKKH
101: DEAATGAAGV IPGSGSYFSY LVTTRAADGS EFRVRRRFRD VVTLADRLAA THRGLFVPAR PDKSIVEGQV MQRHEFVNQR CVAVQRYLCR IAAHPTVSRS
201: DDFHTFLTDP SGIPTSEGES PRFNPAITAA SPTAVTTPTT PTKGGRDFFG MFKDLKQTVA NGLMAVRPPP VEEETDAKFL FHKAKLEQLE QQLAATSQQA
301: EAFAKAHEDF RTTTAHLGMT FVKLAKFEKD QSTCSSHRTR AVNINNFANA VVKVSRSQTK LDAEIVKHLD TIHKYLETMT SVHNAFTDRS NALLHIQSLS
401: SDLFALHNRV AKLESVSSRG IDQERTRYQK VEELKETIRT SEDAKSHARK EYELIKENNM NEIKRFNKEI RQDLVEMMKG FVTSQVAQSD NIASIWAKLA
501: EDTKGYADRS S
101: DEAATGAAGV IPGSGSYFSY LVTTRAADGS EFRVRRRFRD VVTLADRLAA THRGLFVPAR PDKSIVEGQV MQRHEFVNQR CVAVQRYLCR IAAHPTVSRS
201: DDFHTFLTDP SGIPTSEGES PRFNPAITAA SPTAVTTPTT PTKGGRDFFG MFKDLKQTVA NGLMAVRPPP VEEETDAKFL FHKAKLEQLE QQLAATSQQA
301: EAFAKAHEDF RTTTAHLGMT FVKLAKFEKD QSTCSSHRTR AVNINNFANA VVKVSRSQTK LDAEIVKHLD TIHKYLETMT SVHNAFTDRS NALLHIQSLS
401: SDLFALHNRV AKLESVSSRG IDQERTRYQK VEELKETIRT SEDAKSHARK EYELIKENNM NEIKRFNKEI RQDLVEMMKG FVTSQVAQSD NIASIWAKLA
501: EDTKGYADRS S
001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
Arabidopsis Description
SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.