CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70009
CDX81034
CDX98906
CDX99005
CDY32985
CDY57386
CDY58875
CDY60440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58440.1	CDX98906	AT5G06140.1	21156856
AT5G58440.1	CDY60440	AT5G06140.1	21156856
AT5G58440.1	CDX70009	AT5G07120.1	21156856
AT5G58440.1	CDX81034	AT5G07120.1	21156856
AT5G58440.1	CDX99005	AT5G07120.1	21156856
AT5G58440.1	CDY58875	AT5G07120.1	21156856
AT5G58440.1	CDY32985	AT5G58440.1	21156856
AT5G58440.1	CDY57386	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32985	Canola	cytosol	79.96	86.46
CDX81034	Canola	cytosol	69.41	78.07
AT5G58440.1	Thale cress	cytosol	81.75	77.85
CDX99005	Canola	cytosol	74.06	76.81
CDX70009	Canola	cytosol	72.99	76.26
CDY58875	Canola	cytosol	68.69	74.71
VIT_06s0004g07430.t01	Wine grape	cytosol	69.23	69.6
KRH72755	Soybean	cytosol, endoplasmic reticulum	65.47	65.59
KRH17110	Soybean	cytosol	65.65	65.42
GSMUA_Achr8P21250_001	Banana	cytosol	60.47	61.79
Solyc09g031590.2.1	Tomato	cytosol	3.76	61.76
GSMUA_Achr10P...	Banana	cytosol	55.28	60.83
GSMUA_Achr3P10000_001	Banana	mitochondrion	56.17	58.04
TraesCS1B01G235000.1	Wheat	cytosol, plastid	54.38	57.36
TraesCS1D01G223500.1	Wheat	cytosol, plastid	53.85	56.79
TraesCS1A01G221800.1	Wheat	cytosol, plastid	53.31	56.23
Os05t0346100-01	Rice	plasma membrane	54.02	55.93
GSMUA_Achr11P...	Banana	nucleus	51.52	54.75
EES18029	Sorghum	cytosol	52.06	52.91
Zm00001d038007_P001	Maize	extracellular	51.88	52.44
HORVU1Hr1G060480.2	Barley	plastid	53.85	51.28
TraesCS1B01G307500.1	Wheat	cytosol	38.28	41.39
Os01t0827200-01	Rice	cytosol, extracellular	37.21	41.27
Zm00001d010604_P008	Maize	cytosol, plastid	37.21	40.78
TraesCS3B01G379800.1	Wheat	cytosol	37.21	40.7
TraesCS3A01G347900.1	Wheat	cytosol	37.03	40.51
TraesCS3D01G341500.1	Wheat	cytosol	37.03	40.51
TraesCS1A01G298000.1	Wheat	cytosol	37.39	40.5
OQU78173	Sorghum	cytosol	32.56	40.09
TraesCS1D01G293200.1	Wheat	cytosol	36.67	39.81
Zm00001d043022_P001	Maize	cytosol	35.96	39.33
OQU87773	Sorghum	cytosol	35.06	38.13
Zm00001d038449_P001	Maize	cytosol	36.67	27.19
CDX98906	Canola	cytosol	17.17	24.62
CDY60440	Canola	cytosol	16.99	24.36
CDY00386	Canola	nucleus	11.27	10.48

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	GO:A0A078J4G0	UniProt:A0A078J4G0	InterPro:AH/BAR_dom_sf
EnsemblPlants:CDY57386	ProteinID:CDY57386	ProteinID:CDY57386.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:GSBRNA2T00020928001	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf
InterPro:Phox	SMART:SM00312	SUPFAM:SSF64268	UniParc:UPI0004EDE814	InterPro:Vps5_C	SEG:seg

Description

BnaCnng31920DBnaCnng31920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4G0]

Coordinates

chrLK033571:-:14097..16718

Molecular Weight (calculated)

62024.9 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.571

Length

559 amino acids

Sequence
(BLAST)

001: MMGSENADGF EETNLNVPKE EMENLVLNGD GAGDGTGDSS NSAYRSAMST LSNVHDPLSP LPTVLTPANS DPLTAPSSYI EPPSYADVIF SPFDETSDSE
101: INGGEDSSLS PDSLSRSPSS SSSDYIKITV SNPQKEQETS NSIVGGNTYI TYQITTRTNL PDFGVSESSV RRRFRDVVTL ADRLAESYRG FCIPPRPDKS
201: VVESQVMQKQ EFVEQRRVAL EKYLRRLSAH PVIRKSDELK VFLQVQGKLP LPMSTDVASR MLDGAVKLPK QLFGEGGASA VPVHEVVQPA RGGRDLLRLF
301: KELRQSVSND WGGSKPAVVE EDKEFLEKKE KMLDLEQQII NSSQQAESLV KAQQDMGETM GELGLAFIKL TKFENEEAVF NSQRTRATDM KNLATAAVKA
401: SRFYRELNSQ TVKHLDTLHE YLGMMMAVQG AFADRSSALL TVQTLLSELS SLQARAEKLE AASSKVFGGD KSRIRKIEEL KETIKVTEDA KNVAIREYER
501: IKDNNRSEVE RLDGERRADF MNMMKGFVVN QVGYAEKISN VWAKAAEETS QYDREKQSS

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.