Factsheet for Os05t0346100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0827200-01
Os01t0862300-01
Os05t0346100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	Os01t0862300-01	AT5G06140.1	21156856
AT5G07120.1	Os01t0827200-01	AT5G07120.1	21156856
AT5G07120.1	Os05t0346100-01	AT5G07120.1	21156856
AT5G07120.1	Os01t0827200-01	AT5G58440.1	21156856
AT5G07120.1	Os05t0346100-01	AT5G58440.1	21156856
AT5G58440.1	Os01t0862300-01	AT5G06140.1	21156856
AT5G58440.1	Os01t0827200-01	AT5G07120.1	21156856
AT5G58440.1	Os05t0346100-01	AT5G07120.1	21156856
AT5G58440.1	Os01t0827200-01	AT5G58440.1	21156856
AT5G58440.1	Os05t0346100-01	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G235000.1	Wheat	cytosol, plastid	79.26	80.75
TraesCS1D01G223500.1	Wheat	cytosol, plastid	79.07	80.57
Zm00001d038007_P001	Maize	extracellular	79.81	77.94
TraesCS1A01G221800.1	Wheat	cytosol, plastid	75.74	77.17
HORVU1Hr1G060480.2	Barley	plastid	79.81	73.42
EES18029	Sorghum	cytosol	74.44	73.09
GSMUA_Achr8P21250_001	Banana	cytosol	63.33	62.52
GSMUA_Achr10P...	Banana	cytosol	56.67	60.24
KRH73242	Soybean	cytosol	57.22	58.97
GSMUA_Achr3P10000_001	Banana	mitochondrion	58.89	58.78
KRH14903	Soybean	cytosol	56.48	58.65
CDX81034	Canola	cytosol	53.33	57.95
PGSC0003DMT400061516	Potato	cytosol	56.11	56.01
Solyc06g050550.2.1	Tomato	plastid	56.11	56.01
CDY58875	Canola	cytosol	53.15	55.84
Bra005925.1-P	Field mustard	cytosol	53.15	55.84
KRH72755	Soybean	cytosol, endoplasmic reticulum	57.59	55.73
VIT_13s0067g01990.t01	Wine grape	cytosol	57.78	55.71
VIT_06s0004g07430.t01	Wine grape	cytosol	57.04	55.4
CDX70009	Canola	cytosol	54.26	54.77
CDX99005	Canola	cytosol	54.44	54.55
KRH17110	Soybean	cytosol	56.67	54.55
Bra009291.1-P	Field mustard	cytosol	53.89	54.19
CDY57386	Canola	cytosol	55.93	54.02
Bra002651.1-P	Field mustard	cytosol	55.19	53.6
AT5G07120.1	Thale cress	cytosol	54.81	51.75
AT5G58440.1	Thale cress	cytosol	56.11	51.62
Solyc09g031600.2.1	Tomato	cytosol	45.0	51.37
CDY32985	Canola	cytosol	48.52	50.68
Solyc09g031590.2.1	Tomato	cytosol	3.15	50.0
Os01t0827200-01	Rice	cytosol, extracellular	39.63	42.46
Os01t0862300-01	Rice	plasma membrane	18.52	25.06

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	EntrezGene:4338483	ProteinID:AAV43804.1	ProteinID:AAV43809.1
InterPro:AH/BAR_dom_sf	EMBL:AK066689	ProteinID:BAF17173.1	ProteinID:BAS93498.1	ncoils:Coil	ProteinID:EEE63348.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898	GO:GO:0035091	InterPro:IPR001683
InterPro:IPR027267	InterPro:IPR036871	EnsemblPlantsGene:Os05g0346100	EnsemblPlants:Os05t0346100-01	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	UniProt:Q5W6R5
SMART:SM00312	SUPFAM:SSF64268	UniParc:UPI00004548F4	InterPro:Vps5_C	RefSeq:XP_015639649.1	RefSeq:XP_015639650.1
SEG:seg	:	:	:	:	:

Description

Phox-like domain containing protein. (Os05t0346100-01)

Coordinates

chr5:+:16289514..16296595

Molecular Weight (calculated)

58988.5 Da

IEP (calculated)

5.477

GRAVY (calculated)

-0.414

Length

540 amino acids

Sequence
(BLAST)

001: MMSSTAPPDM PAGDGDGDME TLPLASDYAS VASTFDPLLS SAAAAASPPS PTIAAAAAFP LSPSSSSSFV DPPSYADVAA SSSSSPRSAS ASASASPRSA
101: ASDYALIAVS DPTPEAEPAA TSLVPGSAPT YISYLVTSAR RGDHRRHAVR RRFRDFVTLA DRLAEAFRGH FVPPRPDKNT VESQVMQRDE FVAQRRAALE
201: RYLWRLAEHP AIGPSDELRV FLQAEGKMPL PSTTDVASRM LDGAARLPRQ LLAGEEAVAA PQEVVQPAKG GRDLLRIFKE LKQSVVSDWG GVRPPLVEED
301: KEFLDKKQKL QDWEQQLTSA SQQAEALVKA QQDMGETMGA LGLAFIKLTK FETEEAMYDS QRIRAADSKR IATAAVKASR ACRDLNTQTV KYLDTLHEHL
401: GIMLSVHTAF SDRSSALLTV QTLMSDLASL QLRIEKLEAA ASKIFGGDKS RLRKVEELRE TIRATEDAKC CALREYERIK ENNRSELNRL DREKKEDMLE
501: MIKGYVTSQA AYAEKIVEGW ETVAEETSGY ARRSDNNIAW

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.