Factsheet for GSMUA_Achr10P00280_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P10000_001
GSMUA_Achr8P21250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P21250_001	Banana	cytosol	71.85	66.73
GSMUA_Achr3P10000_001	Banana	mitochondrion	68.7	64.51
PGSC0003DMT400061516	Potato	cytosol	62.4	58.6
VIT_06s0004g07430.t01	Wine grape	cytosol	63.98	58.45
CDX81034	Canola	cytosol	57.09	58.35
KRH14903	Soybean	cytosol	59.45	58.08
KRH73242	Soybean	cytosol	59.65	57.82
Solyc06g050550.2.1	Tomato	plastid	61.42	57.67
VIT_13s0067g01990.t01	Wine grape	cytosol	62.8	56.96
TraesCS1D01G223500.1	Wheat	cytosol, plastid	59.25	56.79
Os05t0346100-01	Rice	plasma membrane	60.24	56.67
TraesCS1B01G235000.1	Wheat	cytosol, plastid	58.86	56.42
CDX70009	Canola	cytosol	59.25	56.26
CDY58875	Canola	cytosol	56.89	56.23
Bra005925.1-P	Field mustard	cytosol	56.89	56.23
TraesCS1A01G221800.1	Wheat	cytosol, plastid	58.46	56.04
KRH17110	Soybean	cytosol	61.81	55.97
KRH72755	Soybean	cytosol, endoplasmic reticulum	61.42	55.91
Bra002651.1-P	Field mustard	cytosol	61.02	55.76
Bra009291.1-P	Field mustard	cytosol	58.66	55.49
CDX99005	Canola	cytosol	58.86	55.47
CDY57386	Canola	cytosol	60.83	55.28
GSMUA_Achr11P...	Banana	nucleus	56.5	54.56
AT5G07120.1	Thale cress	cytosol	60.43	53.67
EES18029	Sorghum	cytosol	58.07	53.64
Zm00001d038007_P001	Maize	extracellular	58.27	53.53
AT5G58440.1	Thale cress	cytosol	61.42	53.15
Solyc09g031600.2.1	Tomato	cytosol	49.21	52.85
HORVU1Hr1G060480.2	Barley	plastid	59.45	51.45
CDY32985	Canola	cytosol	52.17	51.26
Solyc09g031590.2.1	Tomato	cytosol	2.95	44.12
GSMUA_Achr10P...	Banana	cytosol, plastid	18.31	22.96

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:GSMUA_Achr10G00280_001	EnsemblPlants:GSMUA_Achr10P00280_001	EnsemblPlants:GSMUA_Achr10T00280_001
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:M0RE55	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF64268	UniParc:UPI0002951958	InterPro:Vps5_C	:	:	:

Description

Putative Sorting nexin-2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G00280_001]

Coordinates

chr10:-:767796..771355

Molecular Weight (calculated)

56509.2 Da

IEP (calculated)

4.962

GRAVY (calculated)

-0.328

Length

508 amino acids

Sequence
(BLAST)

001: MDPDTGFFAS ESPAVREEME SLDLSDATAP SSLPFFVEPP SYADVVLKST FEPQNAVTIP GSGSYPPRAA ASDYLRIVVS DPETMQETSN SPVLGGTTYV
101: TYPITTWVRA VGHGGPSVFC VQRRFRDVVT LAARLAEAYR GYFIPQRPDK SLVDGQVMQK HEFVEQRRWE LEKYLRRLAE HPVIGRSDEL RVFLQAQGKL
201: PLPAATDVAS RMLDGAVRLP KQLFGDAAAG RVAPEDVVQP AKEGRDLLRI FKELKQAVAN DWGGVKPLVV EEDREFLERK EKMQVLEQQL CTASQQAEAL
301: VKAQQDIGET MGEMGLAFIK LTKFETEEAI FSSQKTLSAD AKCVATAAVK ASRLYRELNA QTVKHLDTLH EYLGVMLAVQ SAFSDRTSAL LTAQTLMTDL
401: STLHAKVEKL EVASSKIFGG DRSGLRKVEE LNETIRVTED AKSCALGEYE RIKENNRNEL ERLDREKHDD FLSMLKGFLI NQVEYSEKVA IAWAAVVEET
501: CGYARESN

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.