Factsheet for VIT_06s0004g07430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g07430.t01
VIT_16s0039g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	VIT_16s0039g01230.t01	AT5G06140.1	21156856
AT5G07120.1	VIT_06s0004g07430.t01	AT5G07120.1	21156856
AT5G07120.1	VIT_06s0004g07430.t01	AT5G58440.1	21156856
AT5G58440.1	VIT_16s0039g01230.t01	AT5G06140.1	21156856
AT5G58440.1	VIT_06s0004g07430.t01	AT5G07120.1	21156856
AT5G58440.1	VIT_06s0004g07430.t01	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81034	Canola	cytosol	62.23	69.62
CDY57386	Canola	cytosol	69.6	69.23
KRH17110	Soybean	cytosol	69.78	69.16
KRH72755	Soybean	cytosol, endoplasmic reticulum	67.81	67.56
VIT_13s0067g01990.t01	Wine grape	cytosol	67.99	67.5
CDX70009	Canola	cytosol	64.57	67.1
CDX99005	Canola	cytosol	64.93	66.98
Bra002651.1-P	Field mustard	cytosol	66.91	66.91
Bra005925.1-P	Field mustard	cytosol	61.69	66.73
Bra009291.1-P	Field mustard	cytosol	64.21	66.48
CDY58875	Canola	cytosol	60.97	65.95
GSMUA_Achr8P21250_001	Banana	cytosol	63.85	64.9
Solyc09g031590.2.1	Tomato	cytosol	3.96	64.71
GSMUA_Achr10P...	Banana	cytosol	58.45	63.98
AT5G07120.1	Thale cress	cytosol	65.65	63.81
AT5G58440.1	Thale cress	cytosol	66.73	63.2
CDY32985	Canola	cytosol	58.27	62.67
GSMUA_Achr3P10000_001	Banana	mitochondrion	59.89	61.55
TraesCS1B01G235000.1	Wheat	cytosol, plastid	55.76	58.49
TraesCS1D01G223500.1	Wheat	cytosol, plastid	55.58	58.3
GSMUA_Achr11P...	Banana	nucleus	54.32	57.41
Os05t0346100-01	Rice	plasma membrane	55.4	57.04
TraesCS1A01G221800.1	Wheat	cytosol, plastid	53.78	56.42
EES18029	Sorghum	cytosol	54.86	55.45
Zm00001d038007_P001	Maize	extracellular	54.5	54.79
HORVU1Hr1G060480.2	Barley	plastid	55.58	52.64
Zm00001d010604_P008	Maize	cytosol, plastid	39.57	43.14
Os01t0827200-01	Rice	cytosol, extracellular	38.85	42.86
TraesCS1B01G307500.1	Wheat	cytosol	39.75	42.75
TraesCS1A01G298000.1	Wheat	cytosol	38.85	41.86
Zm00001d043022_P001	Maize	cytosol	38.31	41.68
OQU78173	Sorghum	cytosol	33.99	41.63
TraesCS1D01G293200.1	Wheat	cytosol	38.31	41.36
OQU87773	Sorghum	cytosol	38.13	41.25
TraesCS3B01G379800.1	Wheat	cytosol	37.41	40.7
TraesCS3A01G347900.1	Wheat	cytosol	37.23	40.51
TraesCS3D01G341500.1	Wheat	cytosol	36.87	40.12
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	8.45	29.01
Zm00001d038449_P001	Maize	cytosol	38.49	28.38
VIT_08s0007g02960.t01	Wine grape	plastid	17.81	24.69

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100265711	wikigene:100265711	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf
ProteinID:CCB43438	ProteinID:CCB43438.1	ncoils:Coil	UniProt:F6GUI4	EMBL:FN594951	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016050	GO:GO:0019898	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267
InterPro:IPR036871	EntrezGene:LOC100265711	wikigene:LOC100265711	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195
PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657
SUPFAM:SSF64268	UniParc:UPI00015C7535	ArrayExpress:VIT_06s0004g07430	EnsemblPlantsGene:VIT_06s0004g07430	EnsemblPlants:VIT_06s0004g07430.t01	InterPro:Vps5_C
unigene:Vvi.19785	RefSeq:XP_002277656	RefSeq:XP_002277656.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:8235012..8244801

Molecular Weight (calculated)

62012.3 Da

IEP (calculated)

6.402

GRAVY (calculated)

-0.520

Length

556 amino acids

Sequence
(BLAST)

001: MGSDLHSSRE EMESLILDEP LNGTSYSNYR SAMSSLSDAH HPLSSPMLTT PADTDPLISP LMYRDFRNPN APDHSYVEPP SYADVIFSPF EGENGGNVNG
101: VESPSQKSES SMVMSRSGSS SSEYLKITVS NPQKEQESSN SIVPGGNTYV TYLITTRTNV PEFGGSEFSV RRRFKDVVTL SDRLSESFRG FFIPPRPDKS
201: VVESQVMHKQ EFVEQRRVAL EKYLRRLAAH PVIKKSDELR VFLQVQGKLP LPISTDVASR MLDGAVKLPK QLFGDSGTVV APHEVVQPAK GGRDLLRLFK
301: ELKQSVANDW GGSKPPVGEE DKEFLEKKEK MNDLEQQLSS ASQQAESLVK AQQDIGETLG ELGLAFIKLS KFENEEAVFN SQRIRAAETK VVATAAVKAS
401: RFYRELNAQT VKHLDAFHEY LGLMLAVHGA FSDRSSALLT VQTLLSDLSS LHSRAEKLEA ASSKIFGGDK SRIRKIEEMK ETIRVTEDAK NVAVREYERI
501: KENNRTELER FNRERHADFL SMLKGFVINQ VGYAEKIANV WGKVAEETSG YAKECP

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.