Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G298000.1 | Wheat | cytosol | 90.49 | 90.31 |
| TraesCS1B01G307500.1 | Wheat | cytosol | 86.6 | 86.27 |
| Zm00001d010604_P008 | Maize | cytosol, plastid | 67.57 | 68.24 |
| OQU78173 | Sorghum | cytosol | 59.61 | 67.62 |
| TraesCS3D01G341500.1 | Wheat | cytosol | 56.31 | 56.75 |
| Solyc09g031590.2.1 | Tomato | cytosol | 3.11 | 47.06 |
| Zm00001d038449_P001 | Maize | cytosol | 65.24 | 44.56 |
| GSMUA_Achr11P... | Banana | nucleus | 42.52 | 41.63 |
| CDX81034 | Canola | cytosol | 39.42 | 40.85 |
| TraesCS1D01G223500.1 | Wheat | cytosol, plastid | 41.94 | 40.75 |
| Bra005925.1-P | Field mustard | cytosol | 39.81 | 39.88 |
| KRH14903 | Soybean | cytosol | 40.0 | 39.62 |
| CDY58875 | Canola | cytosol | 39.22 | 39.3 |
| Solyc06g050550.2.1 | Tomato | plastid | 40.78 | 38.82 |
| KRH73242 | Soybean | cytosol | 39.03 | 38.36 |
| VIT_06s0004g07430.t01 | Wine grape | cytosol | 41.36 | 38.31 |
| PGSC0003DMT400061516 | Potato | cytosol | 40.19 | 38.26 |
| CDX99005 | Canola | cytosol | 39.42 | 37.66 |
| CDX70009 | Canola | cytosol | 39.03 | 37.57 |
| CDY32985 | Canola | cytosol | 37.48 | 37.33 |
| KRH72755 | Soybean | cytosol, endoplasmic reticulum | 40.39 | 37.28 |
| KRH17110 | Soybean | cytosol | 40.58 | 37.25 |
| VIT_13s0067g01990.t01 | Wine grape | cytosol | 40.39 | 37.14 |
| Bra009291.1-P | Field mustard | cytosol | 38.45 | 36.87 |
| Bra002651.1-P | Field mustard | cytosol | 39.81 | 36.87 |
| CDY57386 | Canola | cytosol | 39.81 | 36.67 |
| AT5G07120.1 | Thale cress | cytosol | 40.39 | 36.36 |
| AT5G58440.1 | Thale cress | cytosol | 40.39 | 35.43 |
| Solyc09g031600.2.1 | Tomato | cytosol | 31.84 | 34.67 |
| TraesCS3D01G367700.1 | Wheat | cytosol, plastid | 18.25 | 23.5 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | InterPro:AH/BAR_dom_sf | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036871 |
| PFAM:PF00787 | PFAM:PF09325 | PFscan:PS50195 | PANTHER:PTHR10555 | PANTHER:PTHR10555:SF146 | InterPro:PX_dom_sf |
| InterPro:Phox | SMART:SM00312 | SUPFAM:SSF103657 | SUPFAM:SSF64268 | EnsemblPlantsGene:TraesCS1D01G293200 | EnsemblPlants:TraesCS1D01G293200.1 |
| InterPro:Vps5_C | TIGR:cd07596 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:-:392139941..392144667
Molecular Weight (calculated)
53071.4 Da
IEP (calculated)
6.764
GRAVY (calculated)
-0.458
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAEPSSPS ATASAAADDL ETLALDSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXFLDDDED NEEDDDHAPP PLPAPAAAAN GGAGPEFSRI
101: TVSDPKKHAE PVSGAAGVIP GSGSYFSYLV TTRLADGAAE VRVRRRFRDV VALADRLAAA HRGLFVPARP DKSLVEGQVM QRHDFVSQRC TALQRYLRRL
201: AAHPVVGRSP DLRTFLTEPG AIAAFQGEAP RHWTTTVNAA IPTVPAKAGR DLFGMFKDLK QTVVNGLVAT KPPPVEEETD TEFLSHKSRL EDLQQQLTTT
301: SQQAESLVKA QDDLRTTTAH LGMTLIKLAK FEREQATCNS ERRRAGVIQH FANSVVKFSR SQAKLNSEVV QQLDTIHEYL ETMISVNHAF TDRSNALQHV
401: QSLSADLFFL HTRAGRLESV SSRGIGQEWT RYQKIEGLKE TISTREGVKN QALREYESIK ENNMTEIKRF DKDRRRDLIE MLKGFVVNQV SYSDHFANMW
501: GKVAEETKVY ANRSN
101: TVSDPKKHAE PVSGAAGVIP GSGSYFSYLV TTRLADGAAE VRVRRRFRDV VALADRLAAA HRGLFVPARP DKSLVEGQVM QRHDFVSQRC TALQRYLRRL
201: AAHPVVGRSP DLRTFLTEPG AIAAFQGEAP RHWTTTVNAA IPTVPAKAGR DLFGMFKDLK QTVVNGLVAT KPPPVEEETD TEFLSHKSRL EDLQQQLTTT
301: SQQAESLVKA QDDLRTTTAH LGMTLIKLAK FEREQATCNS ERRRAGVIQH FANSVVKFSR SQAKLNSEVV QQLDTIHEYL ETMISVNHAF TDRSNALQHV
401: QSLSADLFFL HTRAGRLESV SSRGIGQEWT RYQKIEGLKE TISTREGVKN QALREYESIK ENNMTEIKRF DKDRRRDLIE MLKGFVVNQV SYSDHFANMW
501: GKVAEETKVY ANRSN
001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
Arabidopsis Description
SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.