Factsheet for TraesCS1D01G223500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221800.1
TraesCS1A01G298000.1
TraesCS1B01G235000.1
TraesCS1B01G307500.1
TraesCS1D01G223500.1
TraesCS1D01G293200.1
TraesCS3A01G347900.1
TraesCS3A01G375200.3
TraesCS3B01G379800.1
TraesCS3B01G407400.2
TraesCS3D01G341500.1
TraesCS3D01G367700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	TraesCS3A01G375200.3	AT5G06140.1	21156856
AT5G07120.1	TraesCS3B01G407400.2	AT5G06140.1	21156856
AT5G07120.1	TraesCS3D01G367700.1	AT5G06140.1	21156856
AT5G07120.1	TraesCS1A01G221800.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS1A01G298000.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS1B01G235000.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS1B01G307500.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS1D01G223500.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS1D01G293200.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS3A01G347900.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS3B01G379800.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS3D01G341500.1	AT5G07120.1	21156856
AT5G07120.1	TraesCS1A01G221800.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS1A01G298000.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS1B01G235000.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS1B01G307500.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS1D01G223500.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS1D01G293200.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS3A01G347900.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS3B01G379800.1	AT5G58440.1	21156856
AT5G07120.1	TraesCS3D01G341500.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS3A01G375200.3	AT5G06140.1	21156856
AT5G58440.1	TraesCS3B01G407400.2	AT5G06140.1	21156856
AT5G58440.1	TraesCS3D01G367700.1	AT5G06140.1	21156856
AT5G58440.1	TraesCS1A01G221800.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS1A01G298000.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS1B01G235000.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS1B01G307500.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS1D01G223500.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS1D01G293200.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS3A01G347900.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS3B01G379800.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS3D01G341500.1	AT5G07120.1	21156856
AT5G58440.1	TraesCS1A01G221800.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS1A01G298000.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS1B01G235000.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS1B01G307500.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS1D01G223500.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS1D01G293200.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS3A01G347900.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS3B01G379800.1	AT5G58440.1	21156856
AT5G58440.1	TraesCS3D01G341500.1	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G235000.1	Wheat	cytosol, plastid	94.72	94.72
TraesCS1A01G221800.1	Wheat	cytosol, plastid	89.81	89.81
HORVU1Hr1G060480.2	Barley	plastid	90.38	81.6
Os05t0346100-01	Rice	plasma membrane	80.57	79.07
EES18029	Sorghum	cytosol	77.17	74.36
Zm00001d038007_P001	Maize	extracellular	76.79	73.6
GSMUA_Achr8P21250_001	Banana	cytosol	63.96	61.97
GSMUA_Achr10P...	Banana	cytosol	56.79	59.25
GSMUA_Achr3P10000_001	Banana	mitochondrion	59.43	58.23
VIT_13s0067g01990.t01	Wine grape	cytosol	60.0	56.79
KRH73242	Soybean	cytosol	56.04	56.68
KRH14903	Soybean	cytosol	55.28	56.35
CDX81034	Canola	cytosol	52.45	55.94
Solyc06g050550.2.1	Tomato	plastid	56.98	55.82
VIT_06s0004g07430.t01	Wine grape	cytosol	58.3	55.58
PGSC0003DMT400061516	Potato	cytosol	56.6	55.45
CDX70009	Canola	cytosol	55.47	54.95
CDX99005	Canola	cytosol	55.66	54.73
Bra009291.1-P	Field mustard	cytosol	55.28	54.56
KRH72755	Soybean	cytosol, endoplasmic reticulum	57.17	54.3
CDY58875	Canola	cytosol	52.64	54.28
Bra005925.1-P	Field mustard	cytosol	52.64	54.28
KRH17110	Soybean	cytosol	57.36	54.19
CDY57386	Canola	cytosol	56.79	53.85
Bra002651.1-P	Field mustard	cytosol	56.04	53.42
AT5G07120.1	Thale cress	cytosol	56.6	52.45
Solyc09g031600.2.1	Tomato	cytosol	45.66	51.16
AT5G58440.1	Thale cress	cytosol	56.04	50.6
CDY32985	Canola	cytosol	48.87	50.1
Solyc09g031590.2.1	Tomato	cytosol	3.21	50.0
TraesCS3D01G341500.1	Wheat	cytosol	40.57	42.07
TraesCS1D01G293200.1	Wheat	cytosol	40.75	41.94
TraesCS3D01G367700.1	Wheat	cytosol, plastid	18.68	24.75

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf
InterPro:Phox	SMART:SM00312	SUPFAM:SSF64268	EnsemblPlantsGene:TraesCS1D01G223500	EnsemblPlants:TraesCS1D01G223500.1	InterPro:Vps5_C
TIGR:cd07596	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:311355504..311361459

Molecular Weight (calculated)

57054.0 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.495

Length

530 amino acids

Sequence
(BLAST)

001: MMSSSPPAGA ADGDMETLPL AAASDYASVA STFDPLLSSS SPASPPAPAX XXXXXXXXXX XXPPSYADVA ASSPRSASAS SSSSPRSARA ATSEYSYIAV
101: SDPETEAEAA ATSLVPGSAP TYISYLVTSA RRGDHRRHSV RRRFRDFVTL ADRLAESFRG HFVPPRPDKN TVESQVMQRD EFVAQRRAAL ERYLWRLAEH
201: PAIGTSDELR VFLQAEGKMP LPSSTDVASR MLDGAARLPR QLLGEEAVAP PQDVVQPAKG GRDLLRIFKE LKQSMVTDWG GVRPPLVEED KEFLEKKQKM
301: QDWEQQLSSA SQQAEALVKA QQDMGDTMGA LGLAFVKLTK FETEEALYES QRIRAVDSKR VATAAVKASR TCRDLNTQTV KYLDTLHEHL GIMLSVHTAF
401: SDRASALLTV QTLMSDLASL QSRIEKLEAA SSKVFGGDRT RLRKVHELRE TIRATEDAKC CALREYERIK ENNKIELSRL DRERREDFLE MLKGYVTSQA
501: SYAEKIVDGW ETVAEETSGY ARRSSDDTTY

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.