Factsheet for GSMUA_Achr8P21250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P10000_001
GSMUA_Achr8P21250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P10000_001	Banana	mitochondrion	72.39	73.2
GSMUA_Achr10P...	Banana	cytosol	66.73	71.85
TraesCS1B01G235000.1	Wheat	cytosol, plastid	62.16	64.15
TraesCS1D01G223500.1	Wheat	cytosol, plastid	61.97	63.96
VIT_06s0004g07430.t01	Wine grape	cytosol	64.9	63.85
KRH14903	Soybean	cytosol	60.69	63.85
VIT_13s0067g01990.t01	Wine grape	cytosol	65.27	63.75
Os05t0346100-01	Rice	plasma membrane	62.52	63.33
PGSC0003DMT400061516	Potato	cytosol	62.52	63.22
Solyc06g050550.2.1	Tomato	plastid	62.34	63.03
KRH73242	Soybean	cytosol	60.15	62.79
CDX81034	Canola	cytosol	56.86	62.58
TraesCS1A01G221800.1	Wheat	cytosol, plastid	59.96	61.89
Solyc09g031590.2.1	Tomato	cytosol	3.84	61.76
Bra002651.1-P	Field mustard	cytosol	62.52	61.51
CDY58875	Canola	cytosol	57.59	61.28
Bra005925.1-P	Field mustard	cytosol	57.59	61.28
Bra009291.1-P	Field mustard	cytosol	59.41	60.52
CDX99005	Canola	cytosol	59.6	60.48
CDY57386	Canola	cytosol	61.79	60.47
KRH72755	Soybean	cytosol, endoplasmic reticulum	61.61	60.39
CDX70009	Canola	cytosol	59.05	60.37
KRH17110	Soybean	cytosol	61.79	60.25
EES18029	Sorghum	cytosol	60.51	60.18
GSMUA_Achr11P...	Banana	nucleus	57.77	60.08
Zm00001d038007_P001	Maize	extracellular	60.69	60.04
AT5G58440.1	Thale cress	cytosol	62.71	58.43
HORVU1Hr1G060480.2	Barley	plastid	62.34	58.09
AT5G07120.1	Thale cress	cytosol	60.69	58.04
CDY32985	Canola	cytosol	54.11	57.25
Solyc09g031600.2.1	Tomato	cytosol	49.36	57.08
GSMUA_Achr10P...	Banana	cytosol, plastid	17.55	23.7

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:GSMUA_Achr8G21250_001	EnsemblPlants:GSMUA_Achr8P21250_001	EnsemblPlants:GSMUA_Achr8T21250_001
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:M0TSC8	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF64268	UniParc:UPI0002961D22	InterPro:Vps5_C	SEG:seg	:	:

Description

phox domain-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G21250_001]

Coordinates

chr8:-:26206055..26212858

Molecular Weight (calculated)

60593.5 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.471

Length

547 amino acids

Sequence
(BLAST)

001: MMGPETPFGF ESPPVREEME SLALSDAPSS DYRSAMSSSL PTAFSPSSPA YGDGGDASSS SASSFLEPPS YADVVFSPFE SQNNGGSDQG SFVHRDCSPR
101: SARTAASDYL KIAVADPQKE QETANSLVPG GATYVTYLIT TRVRSAAAGE VETGPIEFSV RRRFRDVVTL ADRLAEAYRG FFIPPRPDKN VVESQVMQKH
201: EFVEQRRSAL EKYLWRLAEH PVIGKSDELR VFLQAKGKLP LPTTTDVASR MLDGAVRLPK QLFGEGPAAQ VAPQDVVQPA KGGRDLLRIF KELKQAVTND
301: WGGVKPLLVE EDKEFLESKE KMQDLEQQLS IASQQAEALV KGQQDIGETM GELGLAFIKL TKFETEEGVY NTQKVRAADT KNVATAAVKA SRLYRELNAQ
401: TVKHLDTLHE YLGLMLAVHS AFSDRASALL TVQTLMSDLT TLNTRIEKLE AASSKIFGGD SSRLRKVEEL RETIRATENA KICAIKEYER IKENNRNELD
501: RLDRERHDDF LSMLKGFVIN QVGYSEKIAN VWATVAEETS RYARDRN

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.