CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70009
CDX81034
CDX98906
CDX99005
CDY32985
CDY57386
CDY58875
CDY60440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	CDX98906	AT5G06140.1	21156856
AT5G07120.1	CDY60440	AT5G06140.1	21156856
AT5G07120.1	CDX70009	AT5G07120.1	21156856
AT5G07120.1	CDX81034	AT5G07120.1	21156856
AT5G07120.1	CDX99005	AT5G07120.1	21156856
AT5G07120.1	CDY58875	AT5G07120.1	21156856
AT5G07120.1	CDY32985	AT5G58440.1	21156856
AT5G07120.1	CDY57386	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70009	Canola	cytosol	92.39	93.08
CDX81034	Canola	cytosol	74.58	80.89
CDY58875	Canola	cytosol	73.84	77.43
AT5G07120.1	Thale cress	cytosol	79.41	74.83
CDY57386	Canola	cytosol	76.81	74.06
CDY32985	Canola	cytosol	66.42	69.25
VIT_06s0004g07430.t01	Wine grape	cytosol	66.98	64.93
KRH72755	Soybean	cytosol, endoplasmic reticulum	66.42	64.16
KRH17110	Soybean	cytosol	65.12	62.57
Solyc09g031590.2.1	Tomato	cytosol	3.9	61.76
GSMUA_Achr8P21250_001	Banana	cytosol	60.48	59.6
GSMUA_Achr10P...	Banana	cytosol	55.47	58.86
TraesCS1B01G235000.1	Wheat	cytosol, plastid	55.1	56.04
GSMUA_Achr3P10000_001	Banana	mitochondrion	56.03	55.82
TraesCS1D01G223500.1	Wheat	cytosol, plastid	54.73	55.66
TraesCS1A01G221800.1	Wheat	cytosol, plastid	54.36	55.28
Os05t0346100-01	Rice	plasma membrane	54.55	54.44
GSMUA_Achr11P...	Banana	nucleus	51.58	52.85
EES18029	Sorghum	cytosol	52.88	51.82
Zm00001d038007_P001	Maize	extracellular	52.5	51.18
HORVU1Hr1G060480.2	Barley	plastid	54.55	50.09
Os01t0827200-01	Rice	cytosol, extracellular	38.78	41.47
Zm00001d010604_P008	Maize	cytosol, plastid	38.59	40.78
Zm00001d043022_P001	Maize	cytosol	38.22	40.31
TraesCS3A01G347900.1	Wheat	cytosol	38.03	40.12
TraesCS3B01G379800.1	Wheat	cytosol	37.85	39.92
TraesCS3D01G341500.1	Wheat	cytosol	37.85	39.92
OQU87773	Sorghum	cytosol	38.03	39.88
TraesCS1B01G307500.1	Wheat	cytosol	38.22	39.85
TraesCS1D01G293200.1	Wheat	cytosol	37.66	39.42
TraesCS1A01G298000.1	Wheat	cytosol	37.66	39.34
OQU78173	Sorghum	cytosol	32.84	38.99
Zm00001d038449_P001	Maize	cytosol	37.85	27.06
CDX98906	Canola	cytosol	18.92	26.15
CDY60440	Canola	cytosol	18.74	25.9
CDY00386	Canola	nucleus	11.5	10.32

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	GO:A0A078EA83	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDX99005
ProteinID:CDX99005	ProteinID:CDX99005.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
GO:GO:0035091	EnsemblPlantsGene:GSBRNA2T00107128001	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	PFAM:PF00787
PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox
SMART:SM00312	SUPFAM:SSF64268	UniParc:UPI0004EE6C34	InterPro:Vps5_C	SEG:seg	:

Description

BnaC09g48300D

Coordinates

chrLK031907:+:1110234..1112562

Molecular Weight (calculated)

60058.4 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.618

Length

539 amino acids

Sequence
(BLAST)

001: MMGSENDDEA HLHASTEDME NLFLRDVDKS NSDPLSPHPI TVATPADSDP LSATPQSKPN GGDSRSYIEP PSYADVIFSP FDDNSEINGS DDTHSSDYSL
101: SRSPSSSASS DYIKITVSSP QKEQETSTSM LSGGGTYITY LIATRTNLPD YGGGSEFSVR RRFRDVVTLA DRLAESYRGF CIPPRPDKSV VESQVMQKQE
201: FVEQRRVALE KYLRRLVAHP VIRSSDEVKV FLRVEGKLPL QASADVASRM LDGAVKLPRQ LFGEGGGGVE PARGGRDLLR LFKELRQSVS NDWGGSKPAV
301: VEEDKEFLEK KEKMHDLEQQ IINASQQAET LVKAQQEMGE TMGELGLAFI KLTKFENEEA VFNSQRARAN DMKNLATAAV KASRFYRELN SQTVKHLDTL
401: HDYLGLMMAV QGAFADRSSA LLTVQTLLSE LSSLEGRAEK LEAASSKVFG GDKSRIKKIE EIKETIRNTE DAKNVAIREY ERIKENNWSE VERLDRERRA
501: DFLNMMKGFV VSQVGYAEKI AGVWTKAAEE TSQYDRESS

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.