Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G379800.1 | Wheat | cytosol | 97.85 | 97.85 |
| TraesCS3D01G341500.1 | Wheat | cytosol | 97.46 | 97.46 |
| Os01t0827200-01 | Rice | cytosol, extracellular | 60.47 | 61.31 |
| Zm00001d043022_P001 | Maize | cytosol | 61.25 | 61.25 |
| OQU87773 | Sorghum | cytosol | 59.69 | 59.34 |
| TraesCS1A01G298000.1 | Wheat | cytosol | 56.56 | 56.01 |
| GSMUA_Achr11P... | Banana | nucleus | 42.07 | 40.87 |
| TraesCS1A01G221800.1 | Wheat | cytosol, plastid | 42.27 | 40.75 |
| Solyc06g050550.2.1 | Tomato | plastid | 42.27 | 39.93 |
| KRH14903 | Soybean | cytosol | 40.51 | 39.81 |
| PGSC0003DMT400061516 | Potato | cytosol | 42.07 | 39.74 |
| CDX81034 | Canola | cytosol | 37.96 | 39.03 |
| KRH73242 | Soybean | cytosol | 39.92 | 38.93 |
| Bra005925.1-P | Field mustard | cytosol | 38.94 | 38.72 |
| CDY58875 | Canola | cytosol | 38.75 | 38.52 |
| Bra009291.1-P | Field mustard | cytosol | 40.31 | 38.36 |
| Solyc09g031590.2.1 | Tomato | cytosol | 2.54 | 38.24 |
| CDX99005 | Canola | cytosol | 40.12 | 38.03 |
| CDX70009 | Canola | cytosol | 39.73 | 37.94 |
| KRH17110 | Soybean | cytosol | 41.49 | 37.79 |
| VIT_06s0004g07430.t01 | Wine grape | cytosol | 40.51 | 37.23 |
| VIT_13s0067g01990.t01 | Wine grape | cytosol | 40.7 | 37.14 |
| CDY57386 | Canola | cytosol | 40.51 | 37.03 |
| CDY32985 | Canola | cytosol | 37.38 | 36.94 |
| KRH72755 | Soybean | cytosol, endoplasmic reticulum | 40.31 | 36.92 |
| Bra002651.1-P | Field mustard | cytosol | 39.92 | 36.69 |
| AT5G07120.1 | Thale cress | cytosol | 40.31 | 36.01 |
| AT5G58440.1 | Thale cress | cytosol | 40.9 | 35.6 |
| Solyc09g031600.2.1 | Tomato | cytosol | 32.88 | 35.52 |
| TraesCS3A01G375200.3 | Wheat | cytosol, plastid | 18.4 | 22.22 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | InterPro:AH/BAR_dom_sf | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036871 |
| PFAM:PF00787 | PFAM:PF09325 | PFscan:PS50195 | PANTHER:PTHR10555 | PANTHER:PTHR10555:SF146 | InterPro:PX_dom_sf |
| InterPro:Phox | SMART:SM00312 | SUPFAM:SSF64268 | EnsemblPlantsGene:TraesCS3A01G347900 | EnsemblPlants:TraesCS3A01G347900.1 | InterPro:Vps5_C |
| TIGR:cd07596 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:596769713..596774400
Molecular Weight (calculated)
56257.9 Da
IEP (calculated)
6.769
GRAVY (calculated)
-0.540
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAESPATA NHPADQHLET LALDSSSAAS AAASTDPLLH PPPSPSPPSA PAAAANGDPF VEENGEDDSS PILPTPDAPV VSREPSPESY QITVTDPKKH
101: DEAATGAAGV IPGSGSYFSY LVTTRTADGS EFRVRRRFRD VVALADRLAA THRGLFVPAR PDKSIVEGQV MQRHEFVNQR CVAVQRYLCR IAAHPTVSRS
201: DDFRTFLTDP SGIPTSEGES PRFNPAITAA SPTAVTTPTT PTKGGRDFFG MFKDLKQTVA NGLMAVRPPP VEEETDAKFL FHKAKLEQLE QQLAATSQQA
301: EAFAKAHEDF RTTTAHLGMT FVKLAKFEKD QSACSSHRTR AVNINNFANA VVKVSRSQTK LDAEIVKHLD TIHKYLETMT SVHNAFTDRS NALLHIQSLS
401: SDLFALHNRV AKLESVSSRG IDQERTRYQK VEELKETIRT SEDAKSHARK EYELIKENNM NEIKRFNKEI RQDLVEMMKG FVTSQVEQSD NIASIWAKLA
501: EDTKGYAERR S
101: DEAATGAAGV IPGSGSYFSY LVTTRTADGS EFRVRRRFRD VVALADRLAA THRGLFVPAR PDKSIVEGQV MQRHEFVNQR CVAVQRYLCR IAAHPTVSRS
201: DDFRTFLTDP SGIPTSEGES PRFNPAITAA SPTAVTTPTT PTKGGRDFFG MFKDLKQTVA NGLMAVRPPP VEEETDAKFL FHKAKLEQLE QQLAATSQQA
301: EAFAKAHEDF RTTTAHLGMT FVKLAKFEKD QSACSSHRTR AVNINNFANA VVKVSRSQTK LDAEIVKHLD TIHKYLETMT SVHNAFTDRS NALLHIQSLS
401: SDLFALHNRV AKLESVSSRG IDQERTRYQK VEELKETIRT SEDAKSHARK EYELIKENNM NEIKRFNKEI RQDLVEMMKG FVTSQVEQSD NIASIWAKLA
501: EDTKGYAERR S
001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
Arabidopsis Description
SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.