Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G293200.1 | Wheat | cytosol | 90.31 | 90.49 |
| TraesCS1B01G307500.1 | Wheat | cytosol | 87.79 | 87.62 |
| Zm00001d010604_P008 | Maize | cytosol, plastid | 68.99 | 69.8 |
| OQU78173 | Sorghum | cytosol | 61.24 | 69.6 |
| TraesCS3A01G347900.1 | Wheat | cytosol | 56.01 | 56.56 |
| Zm00001d038449_P001 | Maize | cytosol | 67.05 | 45.89 |
| Solyc09g031590.2.1 | Tomato | cytosol | 2.91 | 44.12 |
| CDX81034 | Canola | cytosol | 40.7 | 42.25 |
| GSMUA_Achr11P... | Banana | nucleus | 42.05 | 41.25 |
| Bra005925.1-P | Field mustard | cytosol | 40.12 | 40.27 |
| CDY58875 | Canola | cytosol | 39.53 | 39.69 |
| TraesCS1A01G221800.1 | Wheat | cytosol, plastid | 39.92 | 38.87 |
| VIT_06s0004g07430.t01 | Wine grape | cytosol | 41.86 | 38.85 |
| KRH14903 | Soybean | cytosol | 38.95 | 38.65 |
| Solyc06g050550.2.1 | Tomato | plastid | 40.12 | 38.26 |
| CDY32985 | Canola | cytosol | 38.18 | 38.1 |
| CDX70009 | Canola | cytosol | 39.15 | 37.76 |
| PGSC0003DMT400061516 | Potato | cytosol | 39.53 | 37.71 |
| CDX99005 | Canola | cytosol | 39.34 | 37.66 |
| KRH73242 | Soybean | cytosol | 38.18 | 37.6 |
| Bra002651.1-P | Field mustard | cytosol | 40.5 | 37.59 |
| KRH72755 | Soybean | cytosol, endoplasmic reticulum | 40.5 | 37.46 |
| CDY57386 | Canola | cytosol | 40.5 | 37.39 |
| KRH17110 | Soybean | cytosol | 40.5 | 37.25 |
| Bra009291.1-P | Field mustard | cytosol | 38.76 | 37.24 |
| VIT_13s0067g01990.t01 | Wine grape | cytosol | 40.31 | 37.14 |
| AT5G07120.1 | Thale cress | cytosol | 40.5 | 36.54 |
| AT5G58440.1 | Thale cress | cytosol | 40.7 | 35.78 |
| Solyc09g031600.2.1 | Tomato | cytosol | 31.78 | 34.67 |
| TraesCS3A01G375200.3 | Wheat | cytosol, plastid | 18.22 | 22.22 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | InterPro:AH/BAR_dom_sf | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036871 |
| PFAM:PF00787 | PFAM:PF09325 | PFscan:PS50195 | PANTHER:PTHR10555 | PANTHER:PTHR10555:SF146 | InterPro:PX_dom_sf |
| InterPro:Phox | SMART:SM00312 | SUPFAM:SSF64268 | EnsemblPlantsGene:TraesCS1A01G298000 | EnsemblPlants:TraesCS1A01G298000.1 | InterPro:Vps5_C |
| TIGR:cd07596 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:493205775..493210683
Molecular Weight (calculated)
54137.6 Da
IEP (calculated)
6.688
GRAVY (calculated)
-0.497
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAEPSSPS ATASAAADDL XXXXXXXXXX XXXXXXXXXX XXXXXXXXGA AARHEPFVID DFLDDDDDNE DEDDHAPPPP PAARAPAAAA NGDAGPEFSR
101: ITVSDPKKHA EPVSGAAGVI PGSGSYFSYL VTTRLADGAD EVRVRRRFRD VVALADRLAA AHRGLFVPAR PDKSLVEGQV MQRHDFVSQR CTALQRYLRR
201: LAAHPVVGRS PDLRTFLTEP GAIAAFQGEA PRHWTTTVNA AIPTVPAKAG RDLFGMFKDL KQTVVNGLVA TKPPPVEEET DTEFLSHKSR LEDLQQQLTT
301: TSQQAESLVK AQDDLRTTTA HLGMTLIKLA KFEREQATCN SERRRAGVIQ HFANSVVKFS RSQAKLNSEV VQQLDTIHEY LEMMISVNHA FTDRSNALQH
401: VQSLSADLFF LHTRAGRLES VSSRGIGQEW TRYQKIEGLK ETISTREGVK NQALREYESI KENNMTEIKR FDKDRRRDLI EMLKGYVVNQ VSYSDHFANM
501: WGKVAEETKV YANRSN
101: ITVSDPKKHA EPVSGAAGVI PGSGSYFSYL VTTRLADGAD EVRVRRRFRD VVALADRLAA AHRGLFVPAR PDKSLVEGQV MQRHDFVSQR CTALQRYLRR
201: LAAHPVVGRS PDLRTFLTEP GAIAAFQGEA PRHWTTTVNA AIPTVPAKAG RDLFGMFKDL KQTVVNGLVA TKPPPVEEET DTEFLSHKSR LEDLQQQLTT
301: TSQQAESLVK AQDDLRTTTA HLGMTLIKLA KFEREQATCN SERRRAGVIQ HFANSVVKFS RSQAKLNSEV VQQLDTIHEY LEMMISVNHA FTDRSNALQH
401: VQSLSADLFF LHTRAGRLES VSSRGIGQEW TRYQKIEGLK ETISTREGVK NQALREYESI KENNMTEIKR FDKDRRRDLI EMLKGYVVNQ VSYSDHFANM
501: WGKVAEETKV YANRSN
001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
Arabidopsis Description
SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.