Factsheet for Zm00001d010604_P008

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010604_P008
Zm00001d012286_P001
Zm00001d038007_P001
Zm00001d038449_P001
Zm00001d042761_P001
Zm00001d043022_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	Zm00001d012286_P001	AT5G06140.1	21156856
AT5G07120.1	Zm00001d042761_P001	AT5G06140.1	21156856
AT5G07120.1	Zm00001d010604_P008	AT5G07120.1	21156856
AT5G07120.1	Zm00001d038007_P001	AT5G07120.1	21156856
AT5G07120.1	Zm00001d038449_P001	AT5G07120.1	21156856
AT5G07120.1	Zm00001d043022_P001	AT5G07120.1	21156856
AT5G07120.1	Zm00001d010604_P008	AT5G58440.1	21156856
AT5G07120.1	Zm00001d038007_P001	AT5G58440.1	21156856
AT5G07120.1	Zm00001d038449_P001	AT5G58440.1	21156856
AT5G07120.1	Zm00001d043022_P001	AT5G58440.1	21156856
AT5G58440.1	Zm00001d012286_P001	AT5G06140.1	21156856
AT5G58440.1	Zm00001d042761_P001	AT5G06140.1	21156856
AT5G58440.1	Zm00001d010604_P008	AT5G07120.1	21156856
AT5G58440.1	Zm00001d038007_P001	AT5G07120.1	21156856
AT5G58440.1	Zm00001d038449_P001	AT5G07120.1	21156856
AT5G58440.1	Zm00001d043022_P001	AT5G07120.1	21156856
AT5G58440.1	Zm00001d010604_P008	AT5G58440.1	21156856
AT5G58440.1	Zm00001d038007_P001	AT5G58440.1	21156856
AT5G58440.1	Zm00001d038449_P001	AT5G58440.1	21156856
AT5G58440.1	Zm00001d043022_P001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G298000.1	Wheat	cytosol	69.8	68.99
TraesCS1B01G307500.1	Wheat	cytosol	68.82	67.89
TraesCS1D01G293200.1	Wheat	cytosol	68.24	67.57
Zm00001d043022_P001	Maize	cytosol	58.04	57.93
Zm00001d038449_P001	Maize	cytosol	76.47	51.72
CDX81034	Canola	cytosol	40.2	41.25
Solyc09g031590.2.1	Tomato	cytosol	2.75	41.18
GSMUA_Achr11P...	Banana	nucleus	41.76	40.49
Solyc06g050550.2.1	Tomato	plastid	42.16	39.74
Bra005925.1-P	Field mustard	cytosol	40.0	39.69
VIT_06s0004g07430.t01	Wine grape	cytosol	43.14	39.57
PGSC0003DMT400061516	Potato	cytosol	41.96	39.56
CDY58875	Canola	cytosol	39.61	39.3
KRH14903	Soybean	cytosol	40.0	39.23
CDX99005	Canola	cytosol	40.78	38.59
KRH72755	Soybean	cytosol, endoplasmic reticulum	42.16	38.53
CDX70009	Canola	cytosol	40.0	38.13
Bra009291.1-P	Field mustard	cytosol	40.0	37.99
KRH17110	Soybean	cytosol	41.57	37.79
CDY32985	Canola	cytosol	38.24	37.72
VIT_13s0067g01990.t01	Wine grape	cytosol	41.37	37.68
Zm00001d038007_P001	Maize	extracellular	40.78	37.61
KRH73242	Soybean	cytosol	38.63	37.6
Bra002651.1-P	Field mustard	cytosol	40.59	37.23
CDY57386	Canola	cytosol	40.78	37.21
Solyc09g031600.2.1	Tomato	cytosol	34.12	36.79
AT5G07120.1	Thale cress	cytosol	41.18	36.71
AT5G58440.1	Thale cress	cytosol	41.18	35.78
Zm00001d012286_P001	Maize	cytosol	16.67	20.38
Zm00001d042761_P001	Maize	mitochondrion	18.63	20.3

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ProteinID:AQK94438.1	ProteinID:AQK94439.1
ProteinID:AQK94441.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:K7VGQ7	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF146	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI000221DF9C	InterPro:Vps5_C	EnsemblPlantsGene:Zm00001d010604	EnsemblPlants:Zm00001d010604_P008
EnsemblPlants:Zm00001d010604_T008	SEG:seg	:	:	:	:

Description

Sorting nexin 2B

Coordinates

chr8:+:121657014..121661331

Molecular Weight (calculated)

56076.2 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.403

Length

510 amino acids

Sequence
(BLAST)

001: MMAAEPSPSV PSTAADALET LALDSSSSSA AATASTSTDP LLRPPTSPTA AASDDPFVID DFDEDDFSTA PAPNVARQPR AARGDAASPV FAKITVSDPK
101: KHAEPSGGGA AGVIPGSGSY FSYLITTRLA GGGGEVRVRR RFRDVVTLAD RLAAAHRGLF VPARPDKSVL EGQVMQRHDF VSQRCAALQR YLRRLAVHPI
201: VGHSPDLRTF LTEPGAVPAF QGEPPRYWTT TLNAAAPLVP TKARRDLFGM FKGLKQTVVN GLVATKPPPV EQETDTEFLA HKARFDDLQQ QLTITSQQAE
301: ALVKAQDDLR ETTGHLGMTL IKLAKFEREQ ATCNSLRRRA GEIHNFANSV LKMSRSQIKL NSEMVKHLGS IHEYLEMMIS VHHAFTDRSN ALYYVQSLSA
401: DLFSLHTRAG GLESSSARDM GHEWSTYQKV EGLKEAIRSA EAAKSDAVRE YESIKENNMI EIKRFDKERR HDFIEMLKGF VVTQVSYSDH FANMWTKVTE
501: ETEVYANRSN

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.