Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002651.1-P | Field mustard | cytosol | 78.88 | 83.27 |
| CDY57386 | Canola | cytosol | 77.85 | 81.75 |
| CDY32985 | Canola | cytosol | 68.99 | 78.34 |
| AT5G07120.1 | Thale cress | cytosol | 71.04 | 72.9 |
| VIT_06s0004g07430.t01 | Wine grape | cytosol | 63.2 | 66.73 |
| Solyc09g031590.2.1 | Tomato | cytosol | 3.75 | 64.71 |
| KRH17110 | Soybean | cytosol | 61.5 | 64.35 |
| KRH72755 | Soybean | cytosol, endoplasmic reticulum | 60.48 | 63.62 |
| GSMUA_Achr8P21250_001 | Banana | cytosol | 58.43 | 62.71 |
| GSMUA_Achr10P... | Banana | cytosol | 53.15 | 61.42 |
| GSMUA_Achr3P10000_001 | Banana | mitochondrion | 53.66 | 58.23 |
| TraesCS1B01G235000.1 | Wheat | cytosol, plastid | 50.77 | 56.23 |
| Os05t0346100-01 | Rice | plasma membrane | 51.62 | 56.11 |
| TraesCS1D01G223500.1 | Wheat | cytosol, plastid | 50.6 | 56.04 |
| GSMUA_Achr11P... | Banana | nucleus | 49.23 | 54.94 |
| TraesCS1A01G221800.1 | Wheat | cytosol, plastid | 49.57 | 54.91 |
| Zm00001d038007_P001 | Maize | extracellular | 49.23 | 52.26 |
| EES18029 | Sorghum | cytosol | 48.72 | 52.0 |
| HORVU1Hr1G060480.2 | Barley | plastid | 50.43 | 50.43 |
| Os01t0827200-01 | Rice | cytosol, extracellular | 36.29 | 42.26 |
| TraesCS1B01G307500.1 | Wheat | cytosol | 36.29 | 41.2 |
| Zm00001d010604_P008 | Maize | cytosol, plastid | 35.78 | 41.18 |
| TraesCS3B01G379800.1 | Wheat | cytosol | 35.78 | 41.1 |
| TraesCS3A01G347900.1 | Wheat | cytosol | 35.6 | 40.9 |
| TraesCS3D01G341500.1 | Wheat | cytosol | 35.6 | 40.9 |
| TraesCS1A01G298000.1 | Wheat | cytosol | 35.78 | 40.7 |
| OQU78173 | Sorghum | cytosol | 31.35 | 40.53 |
| TraesCS1D01G293200.1 | Wheat | cytosol | 35.43 | 40.39 |
| OQU87773 | Sorghum | cytosol | 35.26 | 40.27 |
| Zm00001d043022_P001 | Maize | cytosol | 34.58 | 39.73 |
| Zm00001d038449_P001 | Maize | cytosol | 34.58 | 26.92 |
| AT5G06140.1 | Thale cress | cytosol | 17.04 | 24.88 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | EntrezGene:835957 | UniProt:A0A178UPE2 | ProteinID:AED97053.1 |
| InterPro:AH/BAR_dom_sf | ArrayExpress:AT5G58440 | EnsemblPlantsGene:AT5G58440 | RefSeq:AT5G58440 | TAIR:AT5G58440 | RefSeq:AT5G58440-TAIR-G |
| EnsemblPlants:AT5G58440.1 | TAIR:AT5G58440.1 | EMBL:AY099775 | Unigene:At.29281 | ProteinID:BAB10259.1 | EMBL:BT000285 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006810 |
| GO:GO:0006897 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010008 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016050 |
| GO:GO:0019538 | GO:GO:0019898 | GO:GO:0030904 | GO:GO:0031902 | GO:GO:0032502 | GO:GO:0032585 |
| GO:GO:0035091 | GO:GO:0043621 | GO:GO:0051604 | GO:GO:0090351 | InterPro:IPR001683 | InterPro:IPR027267 |
| InterPro:IPR036871 | RefSeq:NP_200652.2 | ProteinID:OAO95207.1 | PFAM:PF00787 | PFAM:PF09325 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000016 | PO:PO:0000034 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50195 | PANTHER:PTHR10555 | PANTHER:PTHR10555:SF201 |
| InterPro:PX_dom_sf | InterPro:Phox | UniProt:Q8L5Z7 | SMART:SM00312 | Symbol:SNX2a | SUPFAM:SSF64268 |
| UniParc:UPI00000AC4F3 | InterPro:Vps5_C | SEG:seg | : | : | : |
Description
SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
Coordinates
chr5:-:23623794..23626957
Molecular Weight (calculated)
65531.0 Da
IEP (calculated)
4.920
GRAVY (calculated)
-0.632
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.